PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785308.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 305aa    MW: 34332.3 Da    PI: 6.297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W++++   g++R+ k+c++rw +yl
   XP_009785308.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTNTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_009785308.1  67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDVKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.822965IPR017930Myb domain
SuperFamilySSF466896.24E-3111108IPR009057Homeodomain-like
SMARTSM007176.6E-151363IPR001005SANT/Myb domain
PfamPF002497.8E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-241568IPR009057Homeodomain-like
CDDcd001673.07E-111661No hitNo description
SMARTSM007177.7E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.19166116IPR017930Myb domain
PfamPF002499.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.56E-1069111No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDVKNYWNT HLKKKLKKLE  120
SSDLYSKDGS CLSPSNSTSR GQWERTLQTD INTAKQALQN ALSLDKSSPI PEYTTTDVKP  180
INLGCYSYIK QEGKVSTSTY ASSAENIAKL LKQWTRSDST NISEQSKASS STQLSSNNNA  240
TTEEFESLSS FDSFEQSNSD QFSQSLTLEA GKLHCEISKR EVDDQVPLSV MLESWLFDEN  300
DDLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225445e-60AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBankAC2265075e-60AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBankEU1612835e-60EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBankHG9755145e-60HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785308.10.0PREDICTED: myb-related protein 306-like
RefseqXP_016506003.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-106MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S4CXY50.0A0A1S4CXY5_TOBAC; myb-related protein 306-like
TrEMBLA0A1U7X3810.0A0A1U7X381_NICSY; myb-related protein 306-like
STRINGXP_009785308.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-93myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]