PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009785299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 383aa MW: 43610.7 Da PI: 5.7727 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.3e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_009785299.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579***************************.89***************9888999***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra +g ktdW+mhe+rl XP_009785299.1 108 dSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 55666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-58 | 11 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.902 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MDNKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKFDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTSNIESAQ PKKFLDRNFP PNDSWAICRI FKKTNSMANR 180 ALSYSWVNPL SEVASPEVFN QSTTVHFSPE NLSSLTETGS LLHLSSTNDL ASNVPSYKTL 240 NTMVSRPSFL SSPSTEVPCN FMFSSPEVSM FFNTHPSLIT DDIKTSETID FEGSNQQMNS 300 FSISSPQEIQ RSIGIEDDET GLRSNQDSTN DNTTQWENIR SIGFPFSLTT SLADEWKPSL 360 SWDSPSCPSE ISTTYDSTNK CYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-54 | 16 | 176 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-89 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785299.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Refseq | XP_016443589.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-101 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S3XUN7 | 0.0 | A0A1S3XUN7_TOBAC; putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A1U7XEB4 | 0.0 | A0A1U7XEB4_NICSY; putative NAC domain-containing protein 94 | ||||
STRING | XP_009785299.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-104 | NAC family protein |
Publications ? help Back to Top | |||
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