PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785112.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 383aa    MW: 44051.4 Da    PI: 4.8249
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.91.4e-32461632103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................XTTSEE CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................kekiwe 80 
                     Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+Y   + +++  ++ +                +++ we
  XP_009785112.1  46 FLTKTYEMVDDSSTDHVVSWNRGGQSFVVWDPHAFSTSLLPRFFKHNNFSSFVRQLNTYTELRYSKKVLSDLDvqmmlpstcqlgfrkiDPEKWE 140
                     9**********************************************************75444444444333667899888877765449**** PP

                     EEESXXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                     F+++ F kg+k+ll++i+r+k++
  XP_009785112.1 141 FANEAFLKGNKQLLRNIRRRKTT 163
                     ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.19E-3242160IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3542160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4842160IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2846160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-154669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-158496IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-1597109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMDPLYSVKE EYAGSSSGGG GGEPPPPVMT PPQPMEGLHD IGPPPFLTKT YEMVDDSSTD  60
HVVSWNRGGQ SFVVWDPHAF STSLLPRFFK HNNFSSFVRQ LNTYTELRYS KKVLSDLDVQ  120
MMLPSTCQLG FRKIDPEKWE FANEAFLKGN KQLLRNIRRR KTTNSQLLPT EQALGPCVEL  180
GRFGFDEEVD RLRRDKQVLM MELMKLRQQQ QNTRSYLRSL EVRLQGTERK QQQMMNFLAR  240
ALQNPEFVQQ LIRQKEKRKE LEEAITKKRR RPIDQGPSTL DVGGSSRPIK SEPLEFGEGS  300
GFQVSELEAL ALEMQGFGRA RRDQHEEETR EGLEQFGNTD RELDEGFWEE LFNEEDVSGN  360
EDGEEEDVNV LAERLGFLDS SPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-194416518125Heat shock factor protein 1
5d5u_B1e-194416227131Heat shock factor protein 1
5d5v_B1e-194416227131Heat shock factor protein 1
5d5v_D1e-194416227131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256270KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785112.10.0PREDICTED: heat stress transcription factor A-7a isoform X1
RefseqXP_016472860.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S4A8980.0A0A1S4A898_TOBAC; heat stress transcription factor A-7a-like isoform X1
TrEMBLA0A1U7WYW70.0A0A1U7WYW7_NICSY; heat stress transcription factor A-7a isoform X1
STRINGXP_009785112.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B