PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784820.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 482aa    MW: 53438.6 Da    PI: 6.7939
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17160209155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009784820.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-16160218IPR016177DNA-binding domain
PfamPF008475.5E-9160209IPR001471AP2/ERF domain
CDDcd000182.37E-11161219No hitNo description
SMARTSM003801.3E-32161223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17161218IPR001471AP2/ERF domain
PROSITE profilePS5103217.794161217IPR001471AP2/ERF domain
CDDcd000185.95E-13252297No hitNo description
SuperFamilySSF541712.09E-6252296IPR016177DNA-binding domain
SMARTSM003805.7E-13253301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVPEGSV ADESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDI  60
LKVGGAETSR SCSNNDDDQE GYDENRRVTQ SEFVTRQLFP LDGSHTSRKP DWVDLSFDPP  120
NTVSFREAEI VRAQQQYQQQ QQQQPQQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNLSD YEEDMKQMKS LSKEEFVHVL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGREA VTNFEPSTYE  300
GETISDPQSA GGQQDLDLNL GIATSSPKEN ERMGGFQYHP YDMQDASKSQ MDKSAPAIVG  360
SSHFKAQPVT SEQAHLWNGV YSNFFPSYEE RASGKRIDVG SSQGRPNWAL QMHGQVGTTP  420
MSMFTAAASS GFSTPATTAS ASPMSGPNPN TNTPNLPFAS YSTPSTNTTQ YYYQIRPPLP  480
PP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784820.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_016501409.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-110RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4CKH00.0A0A1S4CKH0_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A1U7XED60.0A0A1U7XED6_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009784819.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-105related to AP2.7