PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784757.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 466aa    MW: 51140.4 Da    PI: 7.0012
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.32.7e-23160203144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+ep+rC+RtDGKkWRC r+v +++k+CErH h+++ rsrk++e
  XP_009784757.1 160 DPEPWRCKRTDGKKWRCTRDVAPDQKYCERHAHKSKPRSRKPVE 203
                     79***************************************987 PP
2QLQ36.91.1e-13101136237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll+++++
  XP_009784757.1 101 PFTASQLQEFQRQTIICKYIMASVPVPPQLLLPLSN 136
                     9********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.3E-5100136IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.3E-10101134IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.823101136IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.489160204IPR014977WRC domain
PfamPF088791.1E-18161203IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGNGENTELL DLKMKTTESS PSSYPYKRTM FMSPSSHPHL AAFDKETSSN STCLADDGGS  60
GGGPGDFVGS DSYAAAALSS RALQPFSCSA RESMFLSGKA PFTASQLQEF QRQTIICKYI  120
MASVPVPPQL LLPLSNNPSS AHLPQSNTSG LDLKFSRGSD PEPWRCKRTD GKKWRCTRDV  180
APDQKYCERH AHKSKPRSRK PVEIHNTNNN NSNNRHPPPP TTRNHHRSLQ FPTVQLSEQT  240
RCIEWLGRGD RGGTIPIISC NQQNLQQLMQ SSSGMGFNND HTDLNRRNTP AFQMQDEAKL  300
YPMNNFNQYI SNRSSGQTLE SSPLKNEECS DSVIASLQGR TTRDFIDAWS KDGLNDGISN  360
NGSFTSLTLS MSGWNHGMDE DNEHAQVSIN RMLDSERSSD EVLRSQWLSP VSWMSSTAPG  420
GPLGEALCLG NATNLPSPHG YSNSTANSSC SFNSCENGSH GLDFIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784757.10.0PREDICTED: growth-regulating factor 8
TrEMBLA0A1U7WXV80.0A0A1U7WXV8_NICSY; growth-regulating factor 8
STRINGXP_009784757.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-26growth-regulating factor 8