PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 225aa MW: 25405.4 Da PI: 7.3222 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 131.3 | 3.2e-41 | 26 | 119 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqd +lPianv+rim+++lP++ak+s+dake +qe vsefi +t+ a+++c+re+r+t++++d++wa+ ++G+ +yv pl++yl+k+re e XP_009784547.1 26 REQDLHLPIANVTRIMRRILPQHAKVSDDAKEAIQELVSEFINHITNLANERCHREQRRTVTAEDVIWAMNKIGLTNYVGPLTLYLQKHREQED 119 89*****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-43 | 21 | 125 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.74E-35 | 28 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-22 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.7E-9 | 59 | 77 | No hit | No description |
PRINTS | PR00615 | 5.7E-9 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 5.7E-9 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MERGQHSNQC RITRSSNSEA RQQAKREQDL HLPIANVTRI MRRILPQHAK VSDDAKEAIQ 60 ELVSEFINHI TNLANERCHR EQRRTVTAED VIWAMNKIGL TNYVGPLTLY LQKHREQEDS 120 GQRIRPNTVR PNVELGLARR TGSAQVLPIN YAPGPGYSYP HFPPTGVFYD PAVHVMMNGF 180 NDMINYMRSE EEIGENDGPA ESSSSTATNY GVPAGVNDPY GHLKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-42 | 26 | 116 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784547.1 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A1U7WXA5 | 1e-168 | A0A1U7WXA5_NICSY; nuclear transcription factor Y subunit B-6-like | ||||
STRING | XP_009784547.1 | 1e-169 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16246 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-45 | nuclear factor Y, subunit B6 |