PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784472.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 314aa    MW: 36124.2 Da    PI: 7.0847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_009784472.1 25 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding51.32.6e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_009784472.1  78 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7442072IPR017930Myb domain
SuperFamilySSF466891.16E-3022119IPR009057Homeodomain-like
SMARTSM007175.1E-152474IPR001005SANT/Myb domain
PfamPF002494.9E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-222679IPR009057Homeodomain-like
CDDcd001672.96E-112772No hitNo description
PROSITE profilePS5129423.24673127IPR017930Myb domain
SMARTSM007171.3E-1477125IPR001005SANT/Myb domain
PfamPF002495.3E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2380126IPR009057Homeodomain-like
CDDcd001675.46E-798121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDQHKIKVGF KNNNQEKEED LDLRRGPWTV EEDFTLINFI AHHGEGRWNS LARCAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTMKYLWMPR LVERIQAAAA AATTSGTTVA SSSTTTYIQN  180
QENQPPLPNI STMSEVNVPV QLVNNVDKTN SLNYSSTIFT LENSSATTSS DNSSSDLTDC  240
CYNFPINQST NQDYSQVNQM CYGDQYLTSP TGYFNPGYFQ ALDQQNSQLM DGGYGSDNSW  300
NIEDMWFLPQ QFNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24221254106B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784472.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY35e-93MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1U7WX280.0A0A1U7WX28_NICSY; transcription factor MYB108-like
STRINGXP_009784472.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-85myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]