PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009784451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 521aa MW: 58042.9 Da PI: 6.6085 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.8 | 2.7e-139 | 151 | 521 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L++cA+avs+gdl aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e + s e l+++++++e++P++kf++ XP_009784451.1 151 LKHVLIACAKAVSDGDLLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHMLYEICPYFKFGY 242 689******************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s + l+ +g+rL+k+A++++vpfef++ +a + +d XP_009784451.1 243 MSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLSKLAKAFKVPFEFHA-AAISGSD 336 ******************************************************998899999************************.8999*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L ++pgEalaVn+++ lh+++desvs+e++rd +L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++eri XP_009784451.1 337 VQVENLGIQPGEALAVNFAFTLHHIPDESVSTENHRDGLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDMTLPRGHKERI 431 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++ yr+ee++g+l+lgW++r Lv+ +aW+ XP_009784451.1 432 NVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKRLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 521 **************************************************************5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 71.006 | 125 | 502 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-137 | 151 | 521 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence Send to blast |
MQASQRLRRS PMSNTLYYQP VQKAEACCLP QFQTLDNHLS YINGSHGFYH SPSTASFSSN 60 GSSICHQESQ PYLSDVRQSS ETTNYGSPTS GSCITDGAND FMHKLKELET VMLGPDSDFL 120 ESYDNSLPNS VASTEINSWR QMMEAMPRRD LKHVLIACAK AVSDGDLLTA QVLISELRQM 180 VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA SFELLSYMHM LYEICPYFKF 240 GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVTLIQAFA ARPGGPPHIR VTGIDDSTSA 300 YARGGGLNIV GQRLSKLAKA FKVPFEFHAA AISGSDVQVE NLGIQPGEAL AVNFAFTLHH 360 IPDESVSTEN HRDGLLRMVK NLNPKVVTLV EQESNTNTAA FFPRFLETLD YYTAMFESID 420 MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL GKWKSRFRMA GFSPYPLSSL 480 VNATIKRLLE SYSDKYRLEE RDGALYLGWM NRDLVASCAW K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-58 | 158 | 520 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-58 | 158 | 520 | 25 | 377 | Protein SCARECROW |
5hyz_A | 1e-58 | 155 | 521 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT014572 | 0.0 | BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784447.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009784449.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009784450.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009784451.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1U7XBX9 | 0.0 | A0A1U7XBX9_NICSY; scarecrow-like transcription factor PAT1 | ||||
STRING | XP_009784447.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|