PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784446.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 467aa    MW: 51522.4 Da    PI: 8.6746
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29205262260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Cts++C +kk+vers+ d+++++i+Y  +H+h+k
  XP_009784446.1 205 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKKQVERSH-DGHITNIHYITKHEHPK 262
                     7****************************************.***************85 PP
2WRKY104.17.4e-33383440259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+h+
  XP_009784446.1 383 TDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHD 440
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837199263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-26201263IPR003657WRKY domain
SuperFamilySSF1182902.48E-23202263IPR003657WRKY domain
SMARTSM007743.4E-31204262IPR003657WRKY domain
PfamPF031063.3E-22205261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-34368442IPR003657WRKY domain
SuperFamilySSF1182901.96E-28374442IPR003657WRKY domain
PROSITE profilePS5081135.393377442IPR003657WRKY domain
SMARTSM007746.6E-38382441IPR003657WRKY domain
PfamPF031065.8E-26384439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSAEVISGEL QKRVSPDALE KSSQSNQDEN ALSTTCQEVS GEVKPKKSVI EGIEKFQQKP  60
DPDTVTNRSE SKEKGTCDSV SAEVVSDELL KGLSPNSLAK ASESSRVSVL PKKEPYIKSC  120
ESDPPVKDRN VSLVPGKASD SSQHIQREKM EVVVSQPNQE QVTYSTTSEK ALDKLQPRRN  180
PDTSAQALPS DQEITPFGAP EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKKQ  240
VERSHDGHIT NIHYITKHEH PKPLNSPQIS HEFVVPMQMR QPDMPMGTPQ KAKGKKSIVI  300
GQTCQSIEQS ESSLSTAIVP AGDSATDTVL KPHKSGDEAD NSGGPDPKRQ KREVPRSDEI  360
PPIKSHSEPQ HIVQTRSKVD IVTDGYRWRK YGQKLVKGNP NPRSYYRCSS AGCPAKKHVE  420
RASHDPKLVV TAYEGQHDHD TPPSRTVMQN AAGADSNNTT RISGVRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-33206443475WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-177HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784443.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
RefseqXP_009784444.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
TrEMBLA0A1U7X0T40.0A0A1U7X0T4_NICSY; WRKY transcription factor 1-like isoform X1
STRINGXP_009784443.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-73zinc-dependent activator protein-1