PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784444.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 507aa    MW: 56092.4 Da    PI: 8.1565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29245302260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Cts++C +kk+vers+ d+++++i+Y  +H+h+k
  XP_009784444.1 245 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKKQVERSH-DGHITNIHYITKHEHPK 302
                     7****************************************.***************85 PP
2WRKY1048.3e-33423480259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+h+
  XP_009784444.1 423 TDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHD 480
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837239303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-26241303IPR003657WRKY domain
SuperFamilySSF1182902.75E-23242303IPR003657WRKY domain
SMARTSM007743.4E-31244302IPR003657WRKY domain
PfamPF031063.7E-22245301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-34408482IPR003657WRKY domain
SuperFamilySSF1182902.22E-28414482IPR003657WRKY domain
PROSITE profilePS5081135.393417482IPR003657WRKY domain
SMARTSM007746.6E-38422481IPR003657WRKY domain
PfamPF031066.5E-26424479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGTHKEDVTD EVSSEKLQRK QDLDTVTYRS ESKEKGICES MSAEVISGEL QKRVSPDALE  60
KSSQSNQDEN ALSTTCQEVS GEVKPKKSVI EGIEKFQQKP DPDTVTNRSE SKEKGTCDSV  120
SAEVVSDELL KGLSPNSLAK ASESSRVSVL PKKEPYIKSC ESDPPVKDRN VSLVPGKASD  180
SSQHIQREKM EVVVSQPNQE QVTYSTTSEK ALDKLQPRRN PDTSAQALPS DQEITPFGAP  240
EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKKQ VERSHDGHIT NIHYITKHEH  300
PKPLNSPQIS HEFVVPMQMR QPDMPMGTPQ KAKGKKSIVI GQTCQSIEQS ESSLSTAIVP  360
AGDSATDTVL KPHKSGDEAD NSGGPDPKRQ KREVPRSDEI PPIKSHSEPQ HIVQTRSKVD  420
IVTDGYRWRK YGQKLVKGNP NPRSYYRCSS AGCPAKKHVE RASHDPKLVV TAYEGQHDHD  480
TPPSRTVMQN AAGADSNNTT RISGVRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-33246483475WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-176HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784443.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
RefseqXP_009784444.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
TrEMBLA0A1U7X0T40.0A0A1U7X0T4_NICSY; WRKY transcription factor 1-like isoform X1
STRINGXP_009784443.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.27e-73zinc-dependent activator protein-1