PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784429.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 374aa    MW: 41409.8 Da    PI: 10.3791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-15104194186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +++L+ea  ++  +l+rg+l+ ++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ +   +st+p+f++l+
  XP_009784429.1 104 CWSEAATHTLVEAWGSKYVELNRGNLRHQQWQEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSQGLYVSTWPFFSSLN 194
                     7*************************************999987778889**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-25102196No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MIRRHGHTGN PSLDCSSNPN SSTTSHFPSA GVAAASRSRT MSDDDDRVAP PFSIKNSPSS  60
SPSPSPSPPP PCTDNKLLAL PPPPILNPAS MSARTPVFPA REDCWSEAAT HTLVEAWGSK  120
YVELNRGNLR HQQWQEVADA VNALHGHTKK QYRTDIQCKN RIDTLKKKYK IEKARVSQSQ  180
GLYVSTWPFF SSLNALIGVT YKVSPSPSPE TVIPQRRKSP SPSTAAFTPQ WRSSPPLLPP  240
PLFGIPVGFR SKRPAAAMDY TVSRRNFSAM AAAAAAASED SGEEDEEGSE KSSRKRSGGG  300
MVEGDGYRRI AEAIGRFGEI YERVEKAKQR QMLELEKQRM QFAKDLEIQR MKLIMESQLH  360
LQKLKRSKPH FTSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784429.10.0PREDICTED: ras guanine nucleotide exchange factor Y-like
RefseqXP_016466850.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S3ZQP40.0A0A1S3ZQP4_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7XBV80.0A0A1U7XBV8_NICSY; ras guanine nucleotide exchange factor Y-like
STRINGXP_009784429.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-45sequence-specific DNA binding transcription factors