PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 41324.2 Da PI: 6.7557 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.9 | 2.5e-50 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kk+ ++k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_009784261.1 11 VPPGFRFHPTEEELLHYYLRKKIVNDKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 104 69****************************.9***************964444222455************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +g++ktLvfykgrap+g k dW+mheyrl XP_009784261.1 105 YG-NCKRIGMRKTLVFYKGRAPHGLKLDWIMHEYRL 139 *9.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-57 | 8 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 11 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKIVNDKIDL DVIREVDLNK LEPWDIQEKC 60 KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYGNCKR IGMRKTLVFY 120 KGRAPHGLKL DWIMHEYRLD DNNTPQEAVN FCASDSAAQE EGWVVCRVFK KKNHHKVLES 180 PQISSVVTRT LIQNQNTDGV LDQILMYMGR SCNKKHDQTR HMSNIQQFNN NENIQFDTNN 240 MQISSPGISE GRNFLHLPEL ANHRQVHQDC SFDEIMSSTG TDQHYSCMNN YHEESDKKAD 300 WVALDHLVAS QLNGHLQTSS NNLYFPLSHE AQLTQNDVDD DVEFLTYSQS SPLSNLLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 11 | 174 | 15 | 171 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784261.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Refseq | XP_016510067.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-112 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1S4D9H8 | 0.0 | A0A1S4D9H8_TOBAC; NAC domain-containing protein 43-like | ||||
TrEMBL | A0A1U7X3J4 | 0.0 | A0A1U7X3J4_NICSY; NAC domain-containing protein 43-like | ||||
STRING | XP_009784261.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-102 | NAC family protein |