PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009784129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 191aa MW: 21480.3 Da PI: 8.9541 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 83.8 | 4.4e-26 | 6 | 79 | 81 | 154 |
DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +s+k+++ s + + ++lP+e+s +avfrcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_009784129.1 6 TNNNSNKSSKIPQVGSGEGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 79 566778888899999999999999************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.6E-23 | 24 | 78 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 6.5E-25 | 30 | 77 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MRLLVTNNNS NKSSKIPQVG SGEGGKEEDL PTELSLPAVF RCVRVSSVDN VVDQYAYQTS 60 VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS YPSPFNNFMP 120 APPLVMSSSR GNSLLQECMV RLYIYNKSSC PKPHAQREFR APDCLFANKK PWCRSLQHLG 180 KSWQRHEKGN L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784129.1 | 1e-143 | PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X4 | ||||
TrEMBL | A0A1U7XB24 | 1e-141 | A0A1U7XB24_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X4 | ||||
STRING | XP_009784124.1 | 1e-124 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19790.2 | 8e-23 | SHI-related sequence 7 |