PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 261aa MW: 30041.1 Da PI: 9.4553 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 183.6 | 8.1e-57 | 12 | 149 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r++ l++ ++++++++ +a++kr re+ ++ XP_009784124.1 12 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQKqLQANPKRYREN--------------DNNLA 92 6789*********************************************999998866655443233444444433..............22223 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++lP+e+s +avfrcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_009784124.1 93 AGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 149 3345678************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-60 | 14 | 148 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.5E-27 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-24 | 100 | 147 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMMMMREDGI SSNSRCQDCG NQAKKDCPYL RCRTCCKSRG FQCQTHVKST WIPVSRRRPR 60 HHLLHTIQQQ QQQQKQLQAN PKRYRENDNN LAAGGKEEDL PTELSLPAVF RCVRVSSVDN 120 VVDQYAYQTS VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS 180 YPSPFNNFMP APPLVMSSSR GNSLLQECMV RLYIYNKSSC PKPHAQREFR APDCLFANKK 240 PWCRSLQHLG KSWQRHEKGN L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784124.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_009784126.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1U7X368 | 0.0 | A0A1U7X368_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_009784124.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-51 | SHI-related sequence 5 |