PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784124.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 261aa    MW: 30041.1 Da    PI: 9.4553
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702183.68.1e-57121494154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                      +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r++ l++ ++++++++  +a++kr re+               ++  
  XP_009784124.1  12 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQKqLQANPKRYREN--------------DNNLA 92 
                     6789*********************************************999998866655443233444444433..............22223 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        + ++lP+e+s +avfrcvrvssvd+  +++aYqt+v+i+GhvfkGiLydqG+e+
  XP_009784124.1  93 AGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 149
                     3345678************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-6014148IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.5E-271657IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24100147IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMMMMREDGI SSNSRCQDCG NQAKKDCPYL RCRTCCKSRG FQCQTHVKST WIPVSRRRPR  60
HHLLHTIQQQ QQQQKQLQAN PKRYRENDNN LAAGGKEEDL PTELSLPAVF RCVRVSSVDN  120
VVDQYAYQTS VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS  180
YPSPFNNFMP APPLVMSSSR GNSLLQECMV RLYIYNKSSC PKPHAQREFR APDCLFANKK  240
PWCRSLQHLG KSWQRHEKGN L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784124.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1
RefseqXP_009784126.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7X3680.0A0A1U7X368_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X1
STRINGXP_009784124.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-51SHI-related sequence 5