PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784028.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 327aa MW: 37450.2 Da PI: 8.0317

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.8e-31	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++F+ a+++LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+ XP_009784028.1 20 PRLRWTPHLHQCFLLAIQKLGGHDKATPKLVLQMMDVRGLTISHVKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-30	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.63E-15	18	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	20	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGNCERNNGG VRQYTRSKVP RLRWTPHLHQ CFLLAIQKLG GHDKATPKLV LQMMDVRGLT 60 ISHVKSHLQM YRSMKNDVNW QGERSKSQPG KLQSLEDGHS HLQQKEVCVE EEKVLRYHSC 120 CSPTIETLES PFMLLPPKRA RMETTSCKPE SLQNCRERIR EAVANYSYSG DDYMQTINYT 180 EKSGVNKEGI TAFRWQQICD TQREAAVLPL CHTASPSLDF FQTSNLLTNA VQESKHLKLS 240 MQEDENWKSS KKRKFDQSLR KIKNGEEEEE EDSCRLSLSL SLHHPCGQRS STSASTNEAI 300 SSYSDCNYWN SFSEKHSLNL DLSIALS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784028.1	0.0	PREDICTED: uncharacterized protein LOC104232501
Refseq	XP_016440265.1	0.0	PREDICTED: uncharacterized protein LOC107766068
TrEMBL	A0A1S3XJV8	0.0	A0A1S3XJV8_TOBAC; uncharacterized protein LOC107766068
TrEMBL	A0A1U7WZL5	0.0	A0A1U7WZL5_NICSY; uncharacterized protein LOC104232501
STRING	XP_009784028.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-31	G2-like family protein