PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009783878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29509.7 Da PI: 5.7704 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9e-18 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_009783878.1 41 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 94 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.9 | 2.1e-41 | 40 | 132 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++ XP_009783878.1 40 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKAQNKNLHSELQA 132 69***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-19 | 36 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.8E-17 | 39 | 100 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.471 | 40 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.0E-15 | 41 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-15 | 41 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 43 | 103 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-15 | 96 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLMRRSMSFS GVERCDNHQD LRVDDSEMSD DDGSSQLLGE KKRRLNLEQV KALERSFEVA 60 NKLEPERKIQ LARALGLQPR QIAIWFQNRR ARWKTKQLER DYEILKRQYD VLKFDNDALK 120 AQNKNLHSEL QALTLRNRES GGGGAPMINL NKENEGSWSN GSEENNSIDV NIGTTTTTRT 180 SSGDSPFYSN NNKNNVFPES SPIPLAQLFH QSSSRSDLQC HKIDPTVPDD QGFCNMFATP 240 VDDQTNFWPW PEQQQFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783878.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X2 | ||||
TrEMBL | A0A1U7WZ45 | 0.0 | A0A1U7WZ45_NICSY; homeobox-leucine zipper protein HAT7-like isoform X2 | ||||
STRING | XP_009783877.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-55 | homeobox 3 |