PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783877.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 300aa    MW: 34190.9 Da    PI: 5.692
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1784137356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_009783877.1  84 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 137
                     4557899**********************************************9 PP
2HD-ZIP_I/II128.42.9e-4183175193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++
  XP_009783877.1  83 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKAQNKNLHSELQA 175
                     69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1979141IPR009057Homeodomain-like
SMARTSM003895.8E-1782143IPR001356Homeobox domain
PROSITE profilePS5007116.47183139IPR001356Homeobox domain
PfamPF000466.4E-1584137IPR001356Homeobox domain
CDDcd000866.19E-1684140No hitNo description
Gene3DG3DSA:1.10.10.601.9E-1886146IPR009057Homeodomain-like
PRINTSPR000311.8E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.8E-5119135IPR000047Helix-turn-helix motif
PfamPF021832.3E-15139177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAFVPSTPEI SINFQDNHIP STSPKVFPSP CNIPHQDFNG ISSMLMRRSM SFSGVERCDN  60
HQDLRVDDSE MSDDDGSSQL LGEKKRRLNL EQVKALERSF EVANKLEPER KIQLARALGL  120
QPRQIAIWFQ NRRARWKTKQ LERDYEILKR QYDVLKFDND ALKAQNKNLH SELQALTLRN  180
RESGGGGAPM INLNKENEGS WSNGSEENNS IDVNIGTTTT TRTSSGDSPF YSNNNKNNVF  240
PESSPIPLAQ LFHQSSSRSD LQCHKIDPTV PDDQGFCNMF ATPVDDQTNF WPWPEQQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783877.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
TrEMBLA0A1U7WVF10.0A0A1U7WVF1_NICSY; homeobox-leucine zipper protein ATHB-13-like isoform X1
STRINGXP_009783877.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-58HD-ZIP family protein