PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783725.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 340aa    MW: 38334.5 Da    PI: 6.8896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15265289226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+yG++C+FaHg
  XP_009783725.1 265 KTELCNKWQETGTCPYGENCQFAHG 289
                     9***********************8 PP
2zf-CCCH19.41.9e-06302327126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++  C+yG rC+F H+
  XP_009783725.1 302 YKTEVCRMVLAGDMCPYGHRCHFRHS 327
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18259296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-11260295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117263291IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8263290IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-12265289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-12297330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-9297330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188301329IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5301328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQNENPSSDG LNSSTADAAT VPSGNKNYTC SDATSPHLAH NPFLSPTSTH QFDSSEFTPN  60
FYSTFSRTSN SPSQTSFDDI DDIATDGRLH QASYILEYQQ LYNRYTLCLA HLQESIKEVE  120
ALHQENESLR LVNSDLDRRL SLLTQATIQN CLLSDFNRFG LGVNRDSQIS DPRPPNIRPA  180
NVTEPNRPER RNVERVSLPK SISVRSSGYL KLKAQGGKNE GPSQGKTRQK ATNPPLSESQ  240
RVYVPGSKKE EEAVEFEVYN QGMLKTELCN KWQETGTCPY GENCQFAHGI TELRPVIRHP  300
RYKTEVCRMV LAGDMCPYGH RCHFRHSLTE EERRTGPSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-22265330570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153540.0AC215354.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011O23, complete sequence.
GenBankAC2154110.0AC215411.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0180C05, complete sequence.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783725.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_016455236.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N37e-72C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3YSN50.0A0A1S3YSN5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7XB900.0A0A1U7XB90_NICSY; zinc finger CCCH domain-containing protein 14
STRINGXP_009783725.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-71C3H family protein