PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009783676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1129aa MW: 125312 Da PI: 4.7145 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 48 | 92 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_009783676.1 48 QWTPEEDEILRQAVQQFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 92 7****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.3e-19 | 98 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++v+++G++ W+tIa+++ gR +kqc++rw+++l XP_009783676.1 98 KGSWTKEEDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 144 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.6 | 1.6e-14 | 150 | 192 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ + gR+++ +k++w+ XP_009783676.1 150 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 192 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.3E-15 | 41 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.587 | 41 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 45 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 48 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-15 | 48 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-13 | 49 | 92 | No hit | No description |
PROSITE profile | PS51294 | 31.439 | 93 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-30 | 95 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-18 | 97 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.65E-16 | 100 | 144 | No hit | No description |
Pfam | PF13921 | 4.3E-19 | 101 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 102 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.233 | 149 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 149 | 197 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 152 | 199 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-10 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1129 aa Download sequence Send to blast |
MLDYPDLPLS LTMESDKTST TPSDDISSLQ RVQPSHGRTS GPKRRSSQWT PEEDEILRQA 60 VQQFKGKSWK RIAECFKDRT DVQCLHRWQK VLDPELVKGS WTKEEDDKLI ELVNRYGPKK 120 WSTIAQELAG RIGKQCRERW HNHLNPAINK EPWTQEEELT LIRAHQVYGN KWAELAKVLH 180 GRSDNAIKNH WHSSVKKKLD SYLASGLLAQ FPALPNVNHQ NQSVPSSSMT LQQNSEDESV 240 HKEGTEAEDS SVKKKLDSYS VSGLLGQFPA LPNVNHQNQS VPSSSMTLQQ NSEDESVHKE 300 GTEAEDSSVK KKLDSYSVSG LLGQFPALPN VNHQNQSVPS SSMTLQQNSE DESVHKEGTE 360 AEDSSVKKKL DSYSVSGLLG QFPALPNVNH QNQSVPSSSM TLQQNSEDES VHKEGTEAEE 420 VPECSQGSNF AGCSQSTSDL GNTFVHIREN GGMSEESICK KDATSSTAPC CRNYSPVFQD 480 VSCSMLKVPS ELADSKFLEH NLSHDWGNSM EEDWQFNRDD IPNISPPEFI QESSGISVHC 540 LNGNDNHDMV ATANVGNVVE DPYKPNEMFV SVDGSMMVYP EEGIPQCSPS ETGVNGCGQP 600 SYSLFYQSSN YQIPEVGDMV PQNCNALSFD DFEASFHQPF SVPSQFSSED RSSVFDIVLD 660 QFHNPPLEGP DHMKDSSRIV PVNDIGSTTS NTVQTYLLNE NSFVQEEQKD GGALCYDPPR 720 FPSSDVPFFC CDLIQSGSDT QEEYSPFGIR QLMMTSANCL TPLRLWDSPS RDDSPDAILK 780 SAAKTFTGTP SILKKRHRHL LSPLSEKRCE KKLESNLNQE SFYNMSTNFY RPDDMFDESA 840 NEKASMEDKE NLHPSSEDGR KEEGEISGAN DATGMVKQHP GVLVELSSND LFFSPDRFLI 900 KCDRATSLSN KALGRQYARR LEAASNQVTV SSSFETSCLS VVCSPDICGK HRGSVVIATS 960 TALENTAEDS ENGFGAETLS IFGETPFKRS FESPSAWKSP WFMSSFPPST RYDTELEFED 1020 LALFMSPGDR SYDAIGLMKQ LSEQTAPSIA DAHQILGSET PETNLSKRNS KKPKADENCT 1080 LLASNATSER RTLDFNECGI PGKGKETTKF GSNNNSFSSP SSYLLKYCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-64 | 47 | 199 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-64 | 47 | 199 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB056122 | 0.0 | AB056122.1 Nicotiana tabacum NtmybA1 mRNA for Myb, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783676.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_009783680.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_009783687.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_009783696.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1U7X1Y3 | 0.0 | A0A1U7X1Y3_NICSY; myb-related protein 3R-1-like | ||||
STRING | XP_009783676.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-100 | Homeodomain-like protein |