PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783626.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 341aa MW: 39797.6 Da PI: 4.4173

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.1	6.2e-15	105	190	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ e+ +l+r++l++ +W+ev++k+ + g+e+s ++C++ ++ l+k+ykk+ + ++k + +s++p+f++++ XP_009783626.1 105 WSEEESFVLLEVWGERYLELGRRSLRAEDWAEVAEKVtEMIGVEKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKMD 190 ***********************************5568******************99999988899999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-20	104	192	No hit	No description
PROSITE profile	PS51029	8.589	105	197	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDDSDDETRY PSRPNSIYSS SLRSRRSIRN PSSCSRNTHY HGYNNNEFQY DYDDESDEEE 60 AEQEFSSGEN GYHSFQKRRK LETLVSNYEF APRSGSSHSL QGGMWSEEES FVLLEVWGER 120 YLELGRRSLR AEDWAEVAEK VTEMIGVEKS EIECRNQLDV LKKKYKKEIT KMEKTGGGFH 180 SKWPFFKKMD MLMNLRMKGH CGLGCGLDSG EYVFMDPRMY LDRSNVLDEM RDSPAGSDAD 240 NDEEEEVEEL GSGGWEGDNE SAKLLADSIQ RFGKIYEKIE NSKRKQMMEL EKMRRDFQRE 300 LELQKKQIVE RAQEEIAKIR DNYDDEDNGD EDDEETDNIS G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783625.1	0.0	PREDICTED: uncharacterized protein LOC104232187 isoform X1
Refseq	XP_016496917.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like isoform X1
TrEMBL	A0A1S4C6R0	0.0	A0A1S4C6R0_TOBAC; trihelix transcription factor ASIL1-like isoform X1
TrEMBL	A0A1U7XAZ1	0.0	A0A1U7XAZ1_NICSY; uncharacterized protein LOC104232187 isoform X1
STRING	XP_009783625.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-78	Trihelix family protein