PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009783614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 137aa MW: 14221.3 Da PI: 8.2791 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.9 | 2.1e-15 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV XP_009783614.1 8 CGGCRTLLMHPRGATSVRCACCHTV 32 ************************9 PP | |||||||
2 | zf-LSD1 | 43.3 | 6e-14 | 46 | 69 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ XP_009783614.1 46 CGNCRTMLMYPCGAPSVKCAICHY 69 **********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.4E-17 | 5 | 35 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-13 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-14 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MEMAQLICGG CRTLLMHPRG ATSVRCACCH TVNLVPGPNQ FAHVNCGNCR TMLMYPCGAP 60 SVKCAICHYI THVNAGDGRV HVPVHTPNGG ATSSAGPTSS TATARSQNQT VVVQNPMSLD 120 ESGKLVSNVV VGVTTTT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 4e-37 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783614.1 | 1e-95 | PREDICTED: protein LSD1-like isoform X2 | ||||
Refseq | XP_009783615.1 | 1e-95 | PREDICTED: protein LSD1-like isoform X2 | ||||
Swissprot | Q6ASS2 | 3e-49 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A1U7X9L0 | 3e-94 | A0A1U7X9L0_NICSY; protein LSD1-like isoform X2 | ||||
STRING | XP_009783613.1 | 7e-94 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-41 | LSD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|