PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009783399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 553aa MW: 62818.2 Da PI: 9.7328 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 114 | 163 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y+GVr++k +g+W+AeIrd +++r +lg+f+taeeAa a+++a+ +++ XP_009783399.1 114 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 163 59*******9.**********55....35**********************9987 PP | |||||||
2 | AP2 | 59.6 | 7.3e-19 | 472 | 522 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd + kr+r +lg+++ta+eAa a+++a+ +++g+ XP_009783399.1 472 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTYDTAYEAALAYDKAAIEIRGA 522 8*******9.**********42...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-27 | 114 | 163 | No hit | No description |
SMART | SM00380 | 8.2E-27 | 115 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 115 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 115 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-18 | 115 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-14 | 115 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-29 | 472 | 527 | No hit | No description |
SMART | SM00380 | 1.0E-32 | 472 | 535 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-19 | 472 | 528 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-27 | 472 | 527 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 472 | 529 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 472 | 521 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MTVSRELIQT MASQQEHQKK EAVEKPPEID VVEKSNNQVG ESSGTLPHLI RIHVTDRDAT 60 DSSSDEEKAG GEKSEQHGKT CVKEIIIANG KTEVIPKKKS KEKKDITVLQ GDVKKYRGVR 120 QRKWGKWAAE IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRAMASQEE HQKNEAVEKP 180 SEIDVVEKPS KIDLVEKFVN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG EKSERHERTC 240 VKEIIIENGK TTVISKKMSR EKKDIKLLQE NAKKRIHVPE SDATDSSSDN EEKVEGEKSK 300 RHERMCLNET IIENGKTQVI SKKKSNEKKD VKLLQENAKK RICVPDCDAT DSSSGDEENV 360 EGEKSKRHEL TGAKEIVIEN GKTQVISKKK SKEKKHKKLL QENVKKRIHV LDHDTTDSSS 420 DDEVKAERKK SQQQEKSCAK EITFENGKTE VISKKKSKEK KDIMLLQGNV NKYRGVRQRK 480 WGKWAAEIRD TRKRTRTWLG TYDTAYEAAL AYDKAAIEIR GANALTNIIK PPPRKEINII 540 FKIPSLPTDD ARV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-17 | 114 | 527 | 1 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783399.1 | 0.0 | PREDICTED: uncharacterized protein LOC104232005 isoform X1 | ||||
Refseq | XP_016494296.1 | 0.0 | PREDICTED: uncharacterized protein LOC107813530 isoform X1 | ||||
TrEMBL | A0A1S4BZG6 | 0.0 | A0A1S4BZG6_TOBAC; uncharacterized protein LOC107813530 isoform X1 | ||||
TrEMBL | A0A1U7X8Y6 | 0.0 | A0A1U7X8Y6_NICSY; uncharacterized protein LOC104232005 isoform X1 | ||||
STRING | XP_009783399.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-19 | cytokinin response factor 4 |