PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783319.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 518aa    MW: 58151.8 Da    PI: 8.2008
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-184696757
                    --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+
  XP_009783319.1 46 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 96
                    6899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-172596IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-202796IPR009057Homeodomain-like
PROSITE profilePS5007116.6173797IPR001356Homeobox domain
SMARTSM003898.7E-1939101IPR001356Homeobox domain
CDDcd000864.19E-164196No hitNo description
PfamPF000466.0E-164596IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MIHIADCNLF GAEAFCCCCS QDPVVMHSED DKGHTEKNKT RIKVIKTRAQ IEGLEKFYKE  60
HKYPTESMKS ELAQSLGLTE KQVSGWFCHR RLKDKRLLSR ETYANGRQDR SSGVIQDRGS  120
GFRQDSCGST KQGDDKNFDH REVESRRLTA PEVSAAGVTY EVGTQYRAKS NLMEDTPSGS  180
SSSLRDACFS RNVESFDMAT SRYLSSDVPT DLKSVKPRTG PSGYLKVKGQ VENAAITAVK  240
RQLGSLYRQD GPPLGVEFDP LPPGAFESSV QNLVDEPEYA GEPVPALTPD FSKVYKQSNS  300
CIGHGSISKT NSHVPNLEGA SFKKSLKSAH PEYYFNEKPG QNSSIHDGDC YYLGRDSSID  360
MHKGSGREVA VDGRCNYKYM AKHDGAEIRT NTSSSSGFRS PRTGKVNGEQ VKPRFTSCNE  420
TNLKIMEEED LERKPSNFVL KGSKHRYCPE RVLSSKVEKD YIHVDRPPVD ENYNLDRVKI  480
PWENEMRAAK RARDEDPNHQ EYPRNASGTQ CHPRQIIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783319.10.0PREDICTED: uncharacterized protein LOC104231943 isoform X1
RefseqXP_009783327.10.0PREDICTED: uncharacterized protein LOC104231943 isoform X1
RefseqXP_009783336.10.0PREDICTED: uncharacterized protein LOC104231943 isoform X1
TrEMBLA0A1U7X8R20.0A0A1U7X8R2_NICSY; uncharacterized protein LOC104231943 isoform X1
STRINGXP_009783319.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-70HB-other family protein