PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009783239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20621.2 Da PI: 5.7817 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.4 | 1.4e-20 | 2 | 95 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++ +++a+pe++r+ A+ r+ +Pv Gavg++++++++++q+++ XP_009783239.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89 6*************************99******************************98.........89************************** PP DUF260 93 elallk 98 e++l++ XP_009783239.1 90 ETVLVG 95 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.42 | 1 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-17 | 2 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR 60 PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGTLTPTA YMDETFESFR 120 CGGAWDIPNQ FSNKSGSFID GSDHTDTTDW VGLEKRWNTM SSIGSETELS DVSLGLDSGN 180 KEPKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783239.1 | 1e-139 | PREDICTED: LOB domain-containing protein 38-like isoform X2 | ||||
Swissprot | Q9SN23 | 7e-46 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1U7X8I2 | 1e-137 | A0A1U7X8I2_NICSY; LOB domain-containing protein 38-like isoform X2 | ||||
STRING | XP_009783238.1 | 1e-135 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-48 | LOB domain-containing protein 38 |