PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783144.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 478aa MW: 53333 Da PI: 5.3601

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.6e-35	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++ XP_009783144.1 20 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQKHLLKN 105 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_009783144.1 106 IHRRK 110 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.36E-36	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.2E-38	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.2E-61	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-31	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MDVISATAAA TGGGGGPAPF LLKTYEMVDD SQTDDIVSWT PTGHSFVVWN PPEFARILLP 60 TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEEFVKDQK HLLKNIHRRK PIHSHSHPPG 120 STVDPERAAF EEEIDKLSRE KSGLEANVLR FRQQQSAAKL QLEEMTERVG GIEQRQESLL 180 TFVEKAVLNP DFVERLAQKL ESMDISAFSK KRRLPLVDSS QPVQENMSVD NHSSSGVEFG 240 NLCNQDFSNK LRLELSPAVS DINVVSCSTQ SSNEDGGSPH RRISECWSRE VQLRTGGVIY 300 TPEAIELSDT GTSFTLKMDS SLPRAASNVE SSRLHSLPQS LISNEEVDGH ISCQLNLSLA 360 SCLSQVDKNQ HSLRMTLIGQ EMSKHSESQS DANGKNPPND DKSLPPSHDA TGNKQGAATT 420 QVRVNDVFWE QFLTERPGCS DNEEASSSFR GNSYDEQDDR KPNQGVTSNT RKVEHLTL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MDVISATAAA TGGGGGPAPF LLKTYEMVDD SQTDDIVSWT PTGHSFVVWN PPEFARILLP  60
TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEEFVKDQK HLLKNIHRRK PIHSHSHPPG  120
STVDPERAAF EEEIDKLSRE KSGLEANVLR FRQQQSAAKL QLEEMTERVG GIEQRQESLL  180
TFVEKAVLNP DFVERLAQKL ESMDISAFSK KRRLPLVDSS QPVQENMSVD NHSSSGVEFG  240
NLCNQDFSNK LRLELSPAVS DINVVSCSTQ SSNEDGGSPH RRISECWSRE VQLRTGGVIY  300
TPEAIELSDT GTSFTLKMDS SLPRAASNVE SSRLHSLPQS LISNEEVDGH ISCQLNLSLA  360
SCLSQVDKNQ HSLRMTLIGQ EMSKHSESQS DANGKNPPND DKSLPPSHDA TGNKQGAATT  420
QVRVNDVFWE QFLTERPGCS DNEEASSSFR GNSYDEQDDR KPNQGVTSNT RKVEHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	13	109	19	129	Heat shock factor protein 1
5d5v_B	1e-22	13	109	19	129	Heat shock factor protein 1
5d5v_D	1e-22	13	109	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783144.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_016475994.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-165	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S4AHA5	0.0	A0A1S4AHA5_TOBAC; heat stress transcription factor A-5-like
TrEMBL	A0A1U7X886	0.0	A0A1U7X886_NICSY; heat stress transcription factor A-5
STRING	XP_009783144.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-167	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]