PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783131.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 688aa    MW: 77191 Da    PI: 9.4402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07584633147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_009783131.1 584 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 633
                      6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.13E-5387469IPR029071Ubiquitin-related domain
PROSITE profilePS500539.417391461IPR000626Ubiquitin domain
PROSITE profilePS5129416.891579638IPR017930Myb domain
SMARTSM007172.2E-7583636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-9584634IPR009057Homeodomain-like
CDDcd116601.18E-14585635No hitNo description
SuperFamilySSF466893.51E-15585666IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MSSKKRLNYG FSGYQFPVIP KAPRSVRRRH SHNNLDNNQI CAFELLAAVA GELLQESESS  60
ACSNAAEGKD ELADCRVGVK CEQLKEDKAV KSECFSQGSC VESTYIPEPA VLEQNLKHSL  120
DKPNHVENNI FHKHNCSIMN SDFSQKDWSC AKLENCKKVD RGGKFHTEVE GRSSNLENAC  180
NKKIETVTQK QLDDDRKQTD DLTVANSCSV KGPIVEHVNN NAAINSDNSV QFPLYRAVPK  240
PSFGKQRNNV KLGIRDDDEN SFRSYSHSSK IRAFRKTSRI GYRRIKRILT SRHWKIAPQL  300
KDCERSCFNN RVKSFYQNRK RICALERCRV EIPSKRRKMS HYNSAVAYDQ QASSERKSNS  360
PEKGIKRDII PHRGSGASAS AKNHQKKDPC VKFSIKSFNI PELFIEVPET ETVGSLKRSV  420
MEAVRSILGN GLRVGVVLEG KKVRDDNRTL QQAGVSQKGN LDTLGFTLEP SFYPVSPSLL  480
SKDPPASSPC VADHELTRRP PSPILELEFP SASSDPSKTK LDKHDEDYHE LAQSPTNPID  540
PTSDVAIPDS RAVVIIPHLN AEALAVVPGS PKNSRSELSQ RRTRRPFSVA EVEALVEAVE  600
QLGTGRWRDV KIRAFEYADH RTYVDVKDKW KTLVHTASIT PQQRRGEPVP QELLDRVLAA  660
HAYWSQQHAK QHAEALKMAD SQVQNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-635686881121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337RKRICALERCRVEIPSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783131.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_016497955.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1S4C9Z90.0A0A1S4C9Z9_TOBAC; telomere repeat-binding protein 4-like
TrEMBLA0A1U7X0E30.0A0A1U7X0E3_NICSY; telomere repeat-binding protein 4-like
STRINGXP_009783131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-98TRF-like 2