PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009783085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39947.4 Da PI: 6.6038 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_009783085.1 13 RGLWSPEEDEKLIKHITSHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_009783085.1 66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-26 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.686 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.977 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIKHITS HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLIK NKTNNSTKAK THHHQDSTSV FTIDASTNKE VISMDHIKAT LASFSPFPHS 180 NNNTTSTTCN YTPIVPNIEY QNPTFIWSDQ RNQTVTTTSQ FQTSDINHAI TQNSMLDFAS 240 CSLMESSTNI RQGETEYINE NSMWHGTGLE PTTLNPANGT EELMQVQQEE QFPIQTKFCD 300 QEDVYKVNHD QTVENTFDSS NFDFDFVDST LVPCGLYTSV NSMDQISWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783085.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
Refseq | XP_016472474.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A1S4A7A4 | 0.0 | A0A1S4A7A4_TOBAC; transcription factor MYB46-like | ||||
TrEMBL | A0A1U7X9G2 | 0.0 | A0A1U7X9G2_NICSY; transcription factor MYB46-like | ||||
STRING | XP_009783085.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 7e-83 | myb domain protein 67 |