PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783061.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 354aa    MW: 40266.3 Da    PI: 9.2962
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.3e-52141391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeel+v+yL+kkv+g+++++ ++i ++d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk ++s 
  XP_009783061.1  14 LPPGFRFYPTDEELLVQYLCKKVAGHDFSM-QIIGDIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKVITS- 106
                     79****************************.89***************8777899**************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  XP_009783061.1 107 QGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                     9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6610162IPR003441NAC domain
PROSITE profilePS5100560.03514162IPR003441NAC domain
PfamPF023658.3E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FSMQIIGDID LYKFDPWVLP  60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVITSQGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLF EPSRKNGSTK LDEWVLCRIY KKNSSGQKPH MSGLNSKEYS  180
HGSSTSSSSQ FDDMLDSLPE MDHKFSNLPR LNSLKNFQQG EKFNLERLDS ANFDWAILAG  240
LKPMPELGPA NQAPGVQPQP QGHVNNHIHN HNNNNNYMNF LNDGYVQPTN IRGNAKVERV  300
NLDEEVESGI RNQGIDKSGF FQQNINGFSQ TYTNTVDQFG IQCPNQTLNL GFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-11011687174NAC domain-containing protein 19
3swm_B1e-11011687174NAC domain-containing protein 19
3swm_C1e-11011687174NAC domain-containing protein 19
3swm_D1e-11011687174NAC domain-containing protein 19
3swp_A1e-11011687174NAC domain-containing protein 19
3swp_B1e-11011687174NAC domain-containing protein 19
3swp_C1e-11011687174NAC domain-containing protein 19
3swp_D1e-11011687174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783061.10.0PREDICTED: NAC domain-containing protein 72-like
RefseqXP_016445820.10.0PREDICTED: NAC domain-containing protein 72-like isoform X2
SwissprotQ9SQL00.0JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A1S3Y1440.0A0A1S3Y144_TOBAC; NAC domain-containing protein 72-like isoform X2
TrEMBLA0A1U7X0730.0A0A1U7X073_NICSY; NAC domain-containing protein 72-like
STRINGXP_009783061.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-127NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]