PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783051.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 343aa MW: 38110.2 Da PI: 6.5183

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	144	200	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A+rs +RK +i eLe+kv++L++e ++L +l + + ++ XP_009783051.1 144 KRAKRILANRQSASRSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTQFTN 200 9*****************************************999877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-16	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	142	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-8	144	190	No hit	No description
Pfam	PF00170	1.0E-8	144	192	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-10	144	195	No hit	No description
CDD	cd14703	7.25E-22	145	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MQDPSNPNSK NQTPSFSATF RPSHHRRAHS EVNFRLPEDL DLVSDPFDAS AGSFEEIGSE 60 DDFFSTYMDI EKLGTGSNPT DGFNNAAGSS SGLLVADGEK TFSRPRHRHS NSVDSSSLLL 120 SESIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSASRSK ERKARYITEL ERKVQTLQTE 180 ATTLSAQLTL FQRDTTQFTN ENTELKIRLQ AMAQQAQLRD ALNEALKQEV ERLKMATGEM 240 SSSDAYNLGM QHIPYNQSAF FSHQTQSGPS ESQNIQMQQF HSLQDSLLTP HRRLLAGHGQ 300 ALPDTMQQDP LGRFQGLDIG GRGMHHVKTE TPSISASESS STL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MQDPSNPNSK NQTPSFSATF RPSHHRRAHS EVNFRLPEDL DLVSDPFDAS AGSFEEIGSE  60
DDFFSTYMDI EKLGTGSNPT DGFNNAAGSS SGLLVADGEK TFSRPRHRHS NSVDSSSLLL  120
SESIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSASRSK ERKARYITEL ERKVQTLQTE  180
ATTLSAQLTL FQRDTTQFTN ENTELKIRLQ AMAQQAQLRD ALNEALKQEV ERLKMATGEM  240
SSSDAYNLGM QHIPYNQSAF FSHQTQSGPS ESQNIQMQQF HSLQDSLLTP HRRLLAGHGQ  300
ALPDTMQQDP LGRFQGLDIG GRGMHHVKTE TPSISASESS STL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-140	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783051.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_016436686.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_019246034.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-111	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1J6J908	0.0	A0A1J6J908_NICAT; Transcription factor rf2b
TrEMBL	A0A1S3X9U4	0.0	A0A1S3X9U4_TOBAC; transcription factor RF2b-like
TrEMBL	A0A1U7X064	0.0	A0A1U7X064_NICSY; transcription factor RF2b-like
STRING	XP_009783051.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	9e-95	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]