PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782736.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 342aa    MW: 39151.6 Da    PI: 4.3722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.1e-1971463128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeekewy.fFskrdkkyatgkrknr.atksgyWkatgkd 89 
                      GfrF+Ptd+e +  yL + v+g++l+ + +  ++vd+y k ePw++      + + e++  y +F+++ kk++ + r +r + ++g+Wk+  k 
  XP_009782736.1   7 EGFRFRPTDSEGL-TYLLRFVAGQELHDAGFiTTNVDVYgKQEPWEIYDdgvpCGDDEDNTSYrYFITKLKKKS-NARYHRsVGNKGTWKQDNKG 99 
                     6**********99.8999*******87777735677*99456*****733555333344444424455445444.5677775888********** PP

             NAM  90 kevlsk......kgel..vglkktLvfykg..rapkgektdWvmheyrl 128
                     k+v+ k      +  +  +g k+ L + ++    ++ +  +W+m+ey+l
  XP_009782736.1 100 KPVHYKnmgnasS--VvnIGYKTNLSYKNKefYPEDQKDGHWLMKEYEL 146
                     ****996655433..156*********95532455666789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0275169IPR003441NAC domain
PfamPF023651.6E-137146IPR003441NAC domain
SuperFamilySSF1019414.97E-178167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEQLGQEGFR FRPTDSEGLT YLLRFVAGQE LHDAGFITTN VDVYGKQEPW EIYDDGVPCG  60
DDEDNTSYRY FITKLKKKSN ARYHRSVGNK GTWKQDNKGK PVHYKNMGNA SSVVNIGYKT  120
NLSYKNKEFY PEDQKDGHWL MKEYELSKVI LHKFDQDRRD YVLCAIKKLK HVNSSSETST  180
ITTLNNVSEG TDEVTSSVDD LLATNNCKGY YNMCKNLEHY DTMAFQESMV MNNSVDEPLQ  240
VVAEPAEVRD YLYQWDGQEL DKLNQILDCV PEVDVAADIV EPLAAVLEPE VTYTCGQHSV  300
EATAMLNNFD QSVPEDVLGL DPWDIMELDE FNRMLEDVSR CI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782736.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A1U7WZB90.0A0A1U7WZB9_NICSY; protein CUP-SHAPED COTYLEDON 1-like
STRINGXP_009782736.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-10NAC domain containing protein 47