PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782662.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 467aa MW: 51123.1 Da PI: 8.6222 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 44 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW+ eE+ ++++a k++G W++I +++g ++t+ q++s+ qk+ XP_009782662.1 44 RERWSDEEHRKFIEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-16 | 38 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.61 | 39 | 93 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.8E-15 | 42 | 91 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.9E-13 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-9 | 44 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-13 | 44 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.28E-10 | 46 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MTVQDQSKSD TILPSGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFIEALK 60 LHGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNNGD VSSVKSIEIP PPRPKRKPMH 120 PYPRKLAIPV KSGTLAPEIS KRSASPNLCL SETENQSPTS VLSARGSDAF GTVDSSKPSE 180 SPSPVSSAVS ENCGDLVLSE QSDFNLEKRR SSPAQAYASS NPDNQACVKL ELFPEDNDFV 240 KEGSVEASST HSLKLFGKTV FVADSCVLSS PTSGQILLAD VNDEPASRTL SQNSFPMKFS 300 PSDSECAPST VTMYHAPAAN GSPRPNKSVS CHLLSWGSSY VSAAFSCTQV HNPIPMKGRA 360 LFDHKDSEDQ EIQKEGSSTG SNTESVSAEL SVDKSLGVEA QISRNQEARR ELFSIRASVP 420 SLFERRANST KRVKGFVPYK RCLAERGISS STLTGEEREE KRTRLCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ103498 | 1e-103 | DQ103498.1 Solanum ochranthum putative At5g37260 (CT251) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782662.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | A0A1U7WRV3 | 0.0 | A0A1U7WRV3_NICSY; protein REVEILLE 1-like isoform X1 | ||||
STRING | XP_009782662.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3185 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 6e-56 | MYB_related family protein |