PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 21063.9 Da PI: 9.8256 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.3 | 5.5e-12 | 148 | 170 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vk++++prs XP_009782637.1 148 LDDGYKWRKYGQKVVKNTQHPRS 170 59********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-13 | 133 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-10 | 141 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.299 | 143 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-4 | 148 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-8 | 149 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MFSQSLFEDQ ADMSSQQYGF FTFPPNNNNT TLPFGICNQN TLKTLTIIPP SFAADNNSLI 60 ESTALRQKED LTTSIFGGPH LLSLQKATAN TWAWGEVNER SNVKKSRDNI IDDHLGVSAI 120 KMKKMKSSRR KVREPRFCFK TLSDVDVLDD GYKWRKYGQK VVKNTQHPRS LLCYTTVSFY 180 PHATT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 4e-69 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782637.1 | 1e-138 | PREDICTED: probable WRKY transcription factor 48 isoform X2 | ||||
TrEMBL | A0A1U7WRT0 | 1e-137 | A0A1U7WRT0_NICSY; probable WRKY transcription factor 48 isoform X2 | ||||
STRING | XP_009782635.1 | 1e-124 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 2e-22 | WRKY DNA-binding protein 13 |