PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782635.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 225aa    MW: 25886.2 Da    PI: 9.3846
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32148206159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_009782635.1 148 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 206
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33133206IPR003657WRKY domain
SuperFamilySSF1182901.57E-28141206IPR003657WRKY domain
PROSITE profilePS5081129.356143208IPR003657WRKY domain
SMARTSM007749.8E-37148207IPR003657WRKY domain
PfamPF031063.3E-25149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MFSQSLFEDQ ADMSSQQYGF FTFPPNNNNT TLPFGICNQN TLKTLTIIPP SFAADNNSLI  60
ESTALRQKED LTTSIFGGPH LLSLQKATAN TWAWGEVNER SNVKKSRDNI IDDHLGVSAI  120
KMKKMKSSRR KVREPRFCFK TLSDVDVLDD GYKWRKYGQK VVKNTQHPRS YYRCTQDNCR  180
VKKRVERLAE DPRMVITTYE GRHVHSPSLD EEDSQASSQL NNLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27139205874Probable WRKY transcription factor 4
2lex_A4e-27139205874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754434e-69HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782635.11e-171PREDICTED: probable WRKY transcription factor 28 isoform X1
TrEMBLA0A1U7X8591e-169A0A1U7X859_NICSY; probable WRKY transcription factor 28 isoform X1
STRINGXP_009782635.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.16e-53WRKY DNA-binding protein 13