PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782556.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 423aa    MW: 47953.1 Da    PI: 6.8572
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.45.1e-31261316156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkY l+
  XP_009782556.1 261 KQRRCWSPELHRRFIDALKQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYQLH 316
                     79***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.176258318IPR017930Myb domain
SuperFamilySSF466893.58E-17258319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28259319IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-25261316IPR006447Myb domain, plants
PfamPF002496.7E-8263313IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGLIPPELSL DCRPKTYIPH TIIEFLQEVS TMDNSVYEKT LKIEDYVKRL EDEMKKIDSF  60
KRELPLCLLL VNDAIMALRE ESTQYKKPIV KPVFEESIPL KKISLKDDKV EMNKDNDSRE  120
KMSWMSSVQL WDSDPQNPNT DIHNSKKSSK SEPKKIPPQG GDNSGSYDPF QSCKSRNMGK  180
AFSPFNGYSG FPVKVDRKED KDDLPGLTLP TPGIKNLEDS MINGLSSKPR DNSVTSSIIV  240
SYRSNIHITS QLQQQQQTAR KQRRCWSPEL HRRFIDALKQ LGGSQAATPK QIRELMQVDG  300
LTNDEVKSHL QKYQLHIRKL SDTQTPSTSE SVVLGNIWLP QDQYGESSKH SSSQSGSPHC  360
PLQLGGSSRG TSMTLGDSME EEDDERSESH SWKVQMSKKI DVQMSTMNFE DKSIHGDELI  420
TIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13261314255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782556.10.0PREDICTED: uncharacterized protein LOC104231288
TrEMBLA0A1U7WZ170.0A0A1U7WZ17_NICSY; uncharacterized protein LOC104231288
STRINGXP_009782556.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-49G2-like family protein