PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782444.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83179.5 Da    PI: 6.0831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2155110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  XP_009782444.1  55 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 110
                     688999***********************************************999 PP
2START201.24.3e-632624871206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W++s+    e++n +e++++f++  +       +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t+
  XP_009782444.1 262 ELALAAMDELVKMAQTDEPLWFRSVeggrEILNHEEYMRSFTPCIGmrpnsLVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaRTSTT 355
                     5899***************************************999****9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ ++  + +  ++ lpSg+l+++++ng+skvtwveh
  XP_009782444.1 356 DVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSnAPTFPNSRILPSGCLVQDMPNGYSKVTWVEH 450
                     *********************************************************999999999***************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h l+r+l++ g+ +ga++wvatlqrqce+
  XP_009782444.1 451 GEYDESVIHHLYRPLISAGMGFGAQRWVATLQRQCEC 487
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2141106IPR009057Homeodomain-like
SuperFamilySSF466891.34E-2041112IPR009057Homeodomain-like
PROSITE profilePS5007117.63752112IPR001356Homeobox domain
SMARTSM003895.2E-1953116IPR001356Homeobox domain
CDDcd000864.62E-1954112No hitNo description
PfamPF000461.5E-1855110IPR001356Homeobox domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084843.103253490IPR002913START domain
SuperFamilySSF559613.75E-32255487No hitNo description
CDDcd088751.40E-122257486No hitNo description
SMARTSM002341.8E-47262487IPR002913START domain
PfamPF018527.6E-55262487IPR002913START domain
SuperFamilySSF559612.47E-23506744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MEGQSEITRM AENYEGNNSN GRRSREEEPD SRSGSDNLEG ASGDDQDAAD KPPRKKRYHR  60
HTPQQIQELE SLFKECPHPD EKQRLELSKR LSLETRQVKF WFQNRRTQMK TQLERHENSI  120
LRQENDKLRA ENMSIREAMR NPICTNCGGP AMIGEISLEE QHLRIENARL KDELDRVCAL  180
AGKFLGRPIS SLVNAMPPPM PNSSLELGVG NNGFGGLSNV PTTLPLAPPD FGVGISNSLP  240
VVASTRQTTG IERSLERSMY LELALAAMDE LVKMAQTDEP LWFRSVEGGR EILNHEEYMR  300
SFTPCIGMRP NSLVSEASRE TGMVIINSLA LVETLMDSNK WAEMFPCLIA RTSTTDVISS  360
GMGGTRNGAL QLMHAELQVL SPLVPIREVN FLRFCKQHAE GVWAVVDVSI DTIRETSSNA  420
PTFPNSRILP SGCLVQDMPN GYSKVTWVEH GEYDESVIHH LYRPLISAGM GFGAQRWVAT  480
LQRQCECLAI LMSSTVSSRD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS TVHKWNKLCA  540
GNVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPISPQR LFDFLRDERL RSEWDILSNG  600
GPMQEMAHIA KGQDHGNCVS LLRASAINAN QSSMLILQET CIDAAGALVV YAPVDIPAMH  660
VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NTANCGSNGP SCNGGPDQRI SGSLLTVAFQ  720
ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2221850.0GQ222185.1 Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782443.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_016465399.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1S3ZM710.0A0A1S3ZM71_TOBAC; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
TrEMBLA0A1U7WV070.0A0A1U7WV07_NICSY; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRINGXP_009782443.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]