PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 526aa MW: 57967.9 Da PI: 6.6012 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 240 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_009782437.1 240 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 299 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 49.7 | 8.9e-16 | 342 | 393 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_009782437.1 342 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 393 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-18 | 240 | 309 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.1E-12 | 240 | 299 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.14E-23 | 240 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 241 | 308 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.44 | 241 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-29 | 241 | 313 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 242 | 253 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-11 | 342 | 401 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 342 | 402 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-10 | 342 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 343 | 401 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 343 | 401 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 343 | 407 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 383 | 403 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MAPDNNNWLS FSLSSMEMLS SSASQSNSML QSNMKLAPTF DGSSSADSHH YYFADNFFPH 60 GWSNPKSQVM YTEGEKEVLG LNINGNDSSI FQNFLDTQIH QQTPPKLEDF LGGDSSSLTQ 120 DSSSLTHQIY EQQQNNGSAV YHQDFKNLAH GFHYQATAAA AFSNNSGSEV DNSVGTEFVS 180 ESCNELAYSQ CPPALSTGAL SLAVNTTNTT QCLEKEKAIV AVVDSESCKK ITDTFGQRTS 240 IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQVYLGGY DKEEKAARAY DLAALKYWGP 300 TATTNFPVSN YTQELEEMKH MSKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI 360 GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGVNAVTNF EMNRYDVEAI MKSSLPVGGT 420 AKRLKLSLEA EQKSLSSNNQ QQTTQSSSSN NSSSNINFGA MPPMSAIPCG VPFDATAPFY 480 HHNFFHHLQS GNAGASDTSG AVTTMASAMP LLPSGAEFFI WPHQSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782437.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2 | ||||
Refseq | XP_016442765.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2 | ||||
Swissprot | Q52QU2 | 1e-161 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1S3XSB4 | 0.0 | A0A1S3XSB4_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 isoform X2 | ||||
TrEMBL | A0A1U7WR74 | 0.0 | A0A1U7WR74_NICSY; AP2-like ethylene-responsive transcription factor AIL6 isoform X2 | ||||
STRING | XP_009782436.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-153 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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