PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009782436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 527aa MW: 58038.9 Da PI: 6.6012 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 241 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_009782436.1 241 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 300 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 49.7 | 8.9e-16 | 343 | 394 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_009782436.1 343 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 394 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-12 | 241 | 300 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.83E-23 | 241 | 310 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 241 | 310 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.44 | 242 | 308 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-29 | 242 | 314 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 242 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 343 | 403 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-10 | 343 | 394 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-11 | 343 | 402 | No hit | No description |
PROSITE profile | PS51032 | 19.151 | 344 | 402 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 344 | 408 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 344 | 402 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 384 | 404 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence Send to blast |
MAPDNNNWLS FSLSSMEMLS SSASQSNSML QSNMKLAPTF DGSSSADSHH YYFADNFFPH 60 AGWSNPKSQV MYTEGEKEVL GLNINGNDSS IFQNFLDTQI HQQTPPKLED FLGGDSSSLT 120 QDSSSLTHQI YEQQQNNGSA VYHQDFKNLA HGFHYQATAA AAFSNNSGSE VDNSVGTEFV 180 SESCNELAYS QCPPALSTGA LSLAVNTTNT TQCLEKEKAI VAVVDSESCK KITDTFGQRT 240 SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEEKAARA YDLAALKYWG 300 PTATTNFPVS NYTQELEEMK HMSKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR 360 IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGVNAVTN FEMNRYDVEA IMKSSLPVGG 420 TAKRLKLSLE AEQKSLSSNN QQQTTQSSSS NNSSSNINFG AMPPMSAIPC GVPFDATAPF 480 YHHNFFHHLQ SGNAGASDTS GAVTTMASAM PLLPSGAEFF IWPHQSY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782436.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Refseq | XP_016442764.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q52QU2 | 1e-161 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1S3XSA8 | 0.0 | A0A1S3XSA8_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
TrEMBL | A0A1U7WYP2 | 0.0 | A0A1U7WYP2_NICSY; AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
STRING | XP_009782436.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-153 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|