PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782335.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 364aa    MW: 41997.8 Da    PI: 4.7608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.43.9e-5581371129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k    ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v
  XP_009782335.1   8 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLRdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 101
                     69****************************.9***************843432233667************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
  XP_009782335.1 102 YD-KLKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 137
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-605157IPR003441NAC domain
PROSITE profilePS5100559.3158157IPR003441NAC domain
PfamPF023659.9E-299136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLRDKCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYDKLKLIGM RKTLVFYKGR  120
APNGQKTDWI MHEYRLESDE NGPPQEEGWV VCRAFKKKIT GQTKTNMGEG WESNYFNEEP  180
STAVSSIVDP LEYITRQPPP PNFMAQNLLC KQEMELAENN NLNFSYSNSD QFVQLPQLES  240
PTLPLIKRPI SSMSLVSENS NQEDDEQTIN KRCSTINSTS QNVTGDWRAL DKFVASQLSH  300
DNHEQESRYE ADHGLLSSFE EEAHNYSDLG MLLLLSERTE GPKLNEILSS SSDDFDTGVC  360
IFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-50816217170NO APICAL MERISTEM PROTEIN
1ut4_B4e-50816217170NO APICAL MERISTEM PROTEIN
1ut7_A4e-50816217170NO APICAL MERISTEM PROTEIN
1ut7_B4e-50816217170NO APICAL MERISTEM PROTEIN
4dul_A4e-50816217170NAC domain-containing protein 19
4dul_B4e-50816217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782335.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016469037.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotQ9SL411e-155NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A1S3ZXB20.0A0A1S3ZXB2_TOBAC; NAC domain-containing protein 37-like
TrEMBLA0A1U7X7710.0A0A1U7X771_NICSY; NAC domain-containing protein 7-like
STRINGXP_009782335.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-157vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]