PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782234.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 340aa MW: 37878.6 Da PI: 7.4104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.8	1.5e-51	13	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deel+++yL +kv+g+ e ++ + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWkatgkd+++ XP_009782234.1 13 LPPGFRFHPRDEELICDYLMNKVAGSGSESDRhypLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATISGYWKATGKDRAI 107 79*********************99666443335899********7666789********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++k++ lvg++ktLvfy+grapkg+ktdWvmhe+rle XP_009782234.1 108 MRKGSCLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 144 ********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-60	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.794	13	165	IPR003441	NAC domain
Pfam	PF02365	3.0E-26	14	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSSSSLSMVE SKLPPGFRFH PRDEELICDY LMNKVAGSGS ESDRHYPLLI EVDLNKSEPW 60 EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATISGYWKA TGKDRAIMRK GSCLVGMRKT 120 LVFYQGRAPK GRKTDWVMHE FRLETTPPHI SSIKEDWVLC RVFHKNKELL ATKQGAGSSI 180 YHEHDTISSS SLPPLMDPYI TFDQTQPNNI NINTINMNEL YYEQVPCFSI FNPNQTFSSH 240 SHHLPTTTTA GATGAFGGLP ADIGTYLNAA ATSSSCENKV IKAVLSHLNI MEGSHNNINN 300 PAHNIVNIKA GGSPTSFGEG SSETSFLSEV GLTTMWNNHY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-50	8	166	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-50	8	166	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-50	8	166	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-50	8	166	12	166	NO APICAL MERISTEM PROTEIN
4dul_A	8e-50	8	166	12	166	NAC domain-containing protein 19
4dul_B	8e-50	8	166	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782234.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	1e-108	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A1U7X5S2	0.0	A0A1U7X5S2_NICSY; NAC domain-containing protein 21/22-like
STRING	XP_009782234.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-104	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]