PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782167.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 385aa MW: 43849.5 Da PI: 7.234

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.1	1.5e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_009782167.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579*************************.89***********8778899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl XP_009782167.1 108 eGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 56677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-58	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	14	172	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60 KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNAHRA 180 LSHSWVSPTV LENTTSDFLT SSHFTNYSNE ISLINKTNSP IQFSGSTIND LQNSSSNMAS 240 FSTLDLPLYK TLNSNYDPIT SYTFSSCTET SEILPLPKCI NMSNNNIDAS SLLLNMSSSI 300 FGDYSIPLPE NIEGGGVLDQ ETTLKEANHV NNMDHMEEQW RNVRSIGLLP LNMAADAWKT 360 NLLWDSSPCP SSEMSTSYST NKCYT

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP  60
KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNAHRA  180
LSHSWVSPTV LENTTSDFLT SSHFTNYSNE ISLINKTNSP IQFSGSTIND LQNSSSNMAS  240
FSTLDLPLYK TLNSNYDPIT SYTFSSCTET SEILPLPKCI NMSNNNIDAS SLLLNMSSSI  300
FGDYSIPLPE NIEGGGVLDQ ETTLKEANHV NNMDHMEEQW RNVRSIGLLP LNMAADAWKT  360
NLLWDSSPCP SSEMSTSYST NKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	16	175	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	16	175	22	171	NAC domain-containing protein 19
3swm_B	3e-54	16	175	22	171	NAC domain-containing protein 19
3swm_C	3e-54	16	175	22	171	NAC domain-containing protein 19
3swm_D	3e-54	16	175	22	171	NAC domain-containing protein 19
3swp_A	3e-54	16	175	22	171	NAC domain-containing protein 19
3swp_B	3e-54	16	175	22	171	NAC domain-containing protein 19
3swp_C	3e-54	16	175	22	171	NAC domain-containing protein 19
3swp_D	3e-54	16	175	22	171	NAC domain-containing protein 19
4dul_A	2e-54	16	175	19	168	NAC domain-containing protein 19
4dul_B	2e-54	16	175	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149288	1e-116	AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBank	EF514212	1e-116	EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782167.1	0.0	PREDICTED: protein FEZ-like isoform X2
Swissprot	Q9ZVH0	1e-111	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U7WQF6	0.0	A0A1U7WQF6_NICSY; protein FEZ-like isoform X2
STRING	XP_009782166.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-113	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]