PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782166.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 386aa MW: 43951.5 Da PI: 6.7839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.6e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLp + ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s XP_009782166.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPtELATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 107 579*************************.89***********555566999********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgra kg ktdW+mhe+rl XP_009782166.1 108 SeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-57	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.226	14	173	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60 TELATVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSITDSTA PKRFLDKHIP PNDSWAICRI FKKANSNAHR 180 ALSHSWVSPT VLENTTSDFL TSSHFTNYSN EISLINKTNS PIQFSGSTIN DLQNSSSNMA 240 SFSTLDLPLY KTLNSNYDPI TSYTFSSCTE TSEILPLPKC INMSNNNIDA SSLLLNMSSS 300 IFGDYSIPLP ENIEGGGVLD QETTLKEANH VNNMDHMEEQ WRNVRSIGLL PLNMAADAWK 360 TNLLWDSSPC PSSEMSTSYS TNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP  60
TELATVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSITDSTA PKRFLDKHIP PNDSWAICRI FKKANSNAHR  180
ALSHSWVSPT VLENTTSDFL TSSHFTNYSN EISLINKTNS PIQFSGSTIN DLQNSSSNMA  240
SFSTLDLPLY KTLNSNYDPI TSYTFSSCTE TSEILPLPKC INMSNNNIDA SSLLLNMSSS  300
IFGDYSIPLP ENIEGGGVLD QETTLKEANH VNNMDHMEEQ WRNVRSIGLL PLNMAADAWK  360
TNLLWDSSPC PSSEMSTSYS TNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-53	16	176	22	171	NAC domain-containing protein 19
3swm_B	4e-53	16	176	22	171	NAC domain-containing protein 19
3swm_C	4e-53	16	176	22	171	NAC domain-containing protein 19
3swm_D	4e-53	16	176	22	171	NAC domain-containing protein 19
3swp_A	4e-53	16	176	22	171	NAC domain-containing protein 19
3swp_B	4e-53	16	176	22	171	NAC domain-containing protein 19
3swp_C	4e-53	16	176	22	171	NAC domain-containing protein 19
3swp_D	4e-53	16	176	22	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149288	1e-118	AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBank	EF514212	1e-118	EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782166.1	0.0	PREDICTED: protein FEZ-like isoform X1
Swissprot	Q9ZVH0	1e-108	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U7WXX8	0.0	A0A1U7WXX8_NICSY; protein FEZ-like isoform X1
STRING	XP_009782166.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-111	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]