PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782035.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 624aa    MW: 69365.7 Da    PI: 5.018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09508556348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_009782035.1 508 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 556
                      8****************************999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.269501560IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-14502559IPR009057Homeodomain-like
SuperFamilySSF466892.39E-16503561IPR009057Homeodomain-like
SMARTSM007172.0E-8505558IPR001005SANT/Myb domain
CDDcd116606.49E-19507557No hitNo description
PfamPF002493.9E-7508556IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEANEAEIED SVVPVTNTLG ALEKEIADPV VYKLVRVDGD GRLVPATHDE IMVVEDLLED  60
DKCEPKLVPD TRQTTESCKT EGCLMERNPF QAPEGKLEYE NPEVVAEKSN ASVDKVPDLE  120
KIGAPEKVTV HGSAPCSELS NIDLSGRTEI SFNSEDALNE DTPSTSASSS WKPDFSKLEG  180
KICLDNLTVK ELQETFKATF GRETSVKDKQ WLKRRITMGL TNSCDFSCTT FIIRDNLVVR  240
KGEEQISHPV KVRISADPEV GVAHSYSGGS LGDHDNRVND DANFSGTDVP SSAFESCNVT  300
KDLYAEQGTA KRVRKPTKRY IEELSEIEET SEKLPSSDKV SRYRFPCTES LMRPTTIVRS  360
NARPLFTRQD SLGGSGVQIP FVSRIRRSRP RENFTSLLKL QPSDMDMATR QVRSVFDVSG  420
PQEDDKRNND LIKTSSTPPG LTKQPLIAAC EKDEHYSGMR IVELENDMDE DNSDDNVELS  480
DGFENNSDDN VISVPTPKGG MRRKHHRPWT IDEVVKLVEG VARYGAGRWS EIKRLAFASC  540
PYRTSVDLKD KWRNLLKASF VQLPAEKGML NSRKQASVPI PAPILSRVRE LADMQGQFQP  600
ILSTGKSSGH ISGRSVNEAR SGYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782035.10.0PREDICTED: uncharacterized protein LOC104230838
TrEMBLA0A1U7X6E40.0A0A1U7X6E4_NICSY; uncharacterized protein LOC104230838
STRINGXP_009782035.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.19e-99TRF-like 6