PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781858.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 350aa    MW: 39185.1 Da    PI: 6.1826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12137188155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  XP_009781858.1 137 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 188
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.46E-11135192No hitNo description
SuperFamilySSF474592.22E-16136207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12137207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MALETVIYPQ ESFGYGCKEY YIPANLSNYN YELGLLQGGE DMTFTSLLDT GNCNNTNRES  60
SSSPVMYNNN AKEYSCWDPN YSSIEESTNV IGDHQLFVEA SPAMMEPPPA TRAATVSGRR  120
KRRRTRSCKN KEELENQRMT HIAVERNRRK QMNEYLAVIR SLMPPSYVQR GDQASIIGGA  180
INFVKELEHH LQTLEAQKRT HSQQQQQSDC HGSLSTPLFA DYFSFPRYST RSNHSNSSTL  240
ADAAAATTCD SPLAAEKQLA LAEIEVTMAE SHANLKILSK RRPKQLLKMV AGLQCLWLTV  300
LHLNVTTVDH MVLYSLSLML EEGCQLTTAD EIADVVNQLL GRVQEEAASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2119124RKRRRT
3137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781858.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_016479713.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A1S4AT810.0A0A1S4AT81_TOBAC; transcription factor bHLH94-like
TrEMBLA0A1U7WTD20.0A0A1U7WTD2_NICSY; transcription factor bHLH94-like
STRINGXP_009781858.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-86bHLH family protein