PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781788.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 787aa    MW: 86625.5 Da    PI: 5.312
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.62.8e-23219272155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++l+Wt  LH++F++a++++ G ++A P+tile+m+v+gLt+e+v+SHLQkYR+
  XP_009781788.1 219 KTKLVWTDALHNKFLQAIREI-GLDRAYPRTILEVMDVPGLTRENVASHLQKYRI 272
                     689******************.********************************6 PP
2Response_reg79.21.4e-26251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +++vdD+ + +++++ +l+k +y +v +++++++al +l+ +   +D+i+ D+ mp+m+G+el + i++e  ++p+++++a + ++++le l++G
  XP_009781788.1  25 IMVVDDDITCLSIVAALLKKWKY-QVVTVKHARDALCILRFSGvsFDVIVSDVHMPDMNGFELQQVIAQEF-DIPVVFMSADDRDSMVLEGLERG 117
                     89*********************.9999************99999**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  fl Kp++p++l++
  XP_009781788.1 118 AVFFLLKPISPDDLRD 133
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.13E-3121138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.2E-3322146No hitNo description
SMARTSM004488.6E-2823135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.57524139IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-2225134IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.94E-2726139No hitNo description
PROSITE profilePS5129410.343216275IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-24217276IPR009057Homeodomain-like
SuperFamilySSF466892.87E-17217276IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-22219272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGDEMVVANK SSEIVDSEFY KSYSIMVVDD DITCLSIVAA LLKKWKYQVV TVKHARDALC  60
ILRFSGVSFD VIVSDVHMPD MNGFELQQVI AQEFDIPVVF MSADDRDSMV LEGLERGAVF  120
FLLKPISPDD LRDIWQYAAL GKKNKGKGKS VVIEEIQENN SSSKSSSGLL KSPHENVKSS  180
SSINVEKGNK EGNKEESKKK SARKHKEAEK EESSTPPKKT KLVWTDALHN KFLQAIREIG  240
LDRAYPRTIL EVMDVPGLTR ENVASHLQKY RIFLRKVTEE SFRVQAADTN LANSATQSTF  300
GSKGLTTISQ LPQENSGSQQ PFLKNNSLAE TSNRSSSSLS NRRATPAVTL PGYGKAKLVL  360
NEGDSSKITS SNANQLSIAE ATKNQTRSLI HEDISTQLLN AAISANQLIT RNLKSLHNSS  420
AAGERHESNQ SLVQRDSSLI GFERDKELAA MLTSYLNQGA NRTQLTRLPN NVETREGSTG  480
TRLDQGWSSY FNQGANHMQL TRLPNNVETG EGSGTIPDQD YEGEKQSAAM WSSYISQGAN  540
RMQLTRLPNN VETGGGSGTI LGQDCEGEKQ SAAMWSSYFN QGANRVQLTR FPNNFEAGGG  600
SGTKPGQDGE GEKQSAAMWS SYPNQEANRV NQGEKQSEVV MRSSNLQLTR FPNNVETGGG  660
SGTKLGQDFD VSMFDKNNAT SYSSRIGDLT STFYSQLNVQ PFHVENSNDQ GETTFNFTDA  720
SNQDQEAYYP LPLDYTSGEQ GDHRGVTAEE GSSSQLCHTH QNPELEHGDD KDFWDSLLSL  780
SPYNGDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18215278164ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781788.10.0PREDICTED: two-component response regulator ARR11-like
TrEMBLA0A1U7WT660.0A0A1U7WT66_NICSY; two-component response regulator ARR11-like
STRINGXP_009781788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-54response regulator 1