PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009781785.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1693aa MW: 190092 Da PI: 4.878

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009781785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.5e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+ +r+eL++klgLt+rq ++WF+ rR k+k+ XP_009781785.1 24 PKRQMKTPFQLETLERVYAMETYPSEVTRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-16	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.066	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	22	84	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	1.37E-13	25	81	No hit	No description
PROSITE profile	PS50827	15.731	512	571	IPR018501	DDT domain
SMART	SM00571	5.4E-20	512	571	IPR018501	DDT domain
Pfam	PF02791	3.2E-16	514	568	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	693	760	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.1E-6	877	920	IPR028942	WHIM1 domain
Pfam	PF15613	8.8E-14	1049	1121	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1693 aa Download sequence Send to blast
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEV TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNVT VSPREDLMVA EAASDRGSGS 120 ASRSGSGSGS GSSRFDNGDG MPTPPIRYYE SPRRTMERRV IACIEAQLGE PLREDGPILG 180 VEFDELPPGA FGTPIEMAER RDHYRHSYDS KLYGSYDAKQ INVGSALSLS PALTSGHREP 240 AEPKIVSDKY GQIAAPYLYD SPVDGPSKNL PIMQGNGHFV REYGVEGQSI NVMSQQSRQG 300 RFPSPQQDNE FVPSNEDMLQ LDRKRKLSEE ARIGKEVQAN EKRIRKELEK QDLLRRKREE 360 QMKKEMERQD RERRKEEQRL MREQQRKEER FQREEKREME RREKFLQKEL LRVERKKQKE 420 ELRKEREAAK QKVAMERAMA RRIAKESMEL IEDERLELMD LAASSKGLLS IASLDYDTLQ 480 NLESFRESLC EFPPKSVQLK KPFSIQPWNA SDDNVGNLLM AWRFCLNFAD ILGLWPFTLD 540 EFLQAFHDYD SRLLAEIHIA LLKLIIKDIE DVARTPSGGP GTNQYSAVNP EGGHPQIVEG 600 AYLWGFDIRN WQKHLTPLTW PEVLRQFALS AGFGPPLKKK RERACLNDSD ETKGCEDVVS 660 TLRSGSAAEK AVAIMQEKGF MSQRKSRHRL TPGTVKFAAY HVLALEGDKG LNVLDIAERI 720 QKSGLRDLST SKTPEASISV ALSRDPILFE RIAPSTYNVR LAFRKDPADA DAIISAAKEK 780 IQRYANGFLS GQNAEDEERD DDSEGEGDVA EGPEVDDLGT PYGANKNSEQ CSILDTCLVN 840 GKSKPSDEVA QQIGVDVAGI EGSNPSQECS EIDESKAGQP WVQGLTEGEY SDLCVEERLN 900 ALVALIGIAN EGNSIRVILE DRLDAANALK KQMWAEAQLD KRRLKEETIN KFTDSSFNAV 960 VEGSQSPLGF PNSKNQGTAP TTLVKDESAV VVDNVQNHFE SISAEKSSVA QETFMGELAI 1020 QPSGSTAERS RMQLKSFIGH KAEEMYVYRS LPLGQDRRRN RYWLFVASGS SEDPGSGRIF 1080 VEPPHGCWRL IDTEEAFDCL LASLDTRGVR ESHLHIMLQK IEGPFKERVR RSYDDIIVQH 1140 GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDSWETSS SFKIELGKNE EERRNAFKRY 1200 QSFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICRHCLDS YPSEEGNCPS CNKMSGKVDM 1260 NAEFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDRR 1320 RTWGMKLQNS LSPEDLLQIL TQLEGVIKRD YLSADYETAE ELMGLCALSI NAACESTFPG 1380 SVPQLPWIPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPVELS SPLIQNPSLG 1440 YACMKDLQKV EPEVDRDGPL REENWDYLSS MPSSSRSRQV VRGRGGGRPR GRLQKGSASK 1500 ISESGRAGVR PIETLTQVLI KQGETHGQRH VRGRRTVRKR RIEKKIVEEI QPDYLGDKGS 1560 RLTFVVPPRK HGREEFDMNV EGIEATNDDS NSMEAADSDD CAPENTYQFN RSDLMEMSDE 1620 DQDGFACDGN DDDNDDDDDD DDDDPDNDND DRYRSHGQNM ERYGNMVEDD SDRDGDVNED 1680 QESDSSESGD YSD

Sequence ? help Back to Top

Protein Sequence Length: 1693 aa Download sequence Send to blast

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEV TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNVT VSPREDLMVA EAASDRGSGS  120
ASRSGSGSGS GSSRFDNGDG MPTPPIRYYE SPRRTMERRV IACIEAQLGE PLREDGPILG  180
VEFDELPPGA FGTPIEMAER RDHYRHSYDS KLYGSYDAKQ INVGSALSLS PALTSGHREP  240
AEPKIVSDKY GQIAAPYLYD SPVDGPSKNL PIMQGNGHFV REYGVEGQSI NVMSQQSRQG  300
RFPSPQQDNE FVPSNEDMLQ LDRKRKLSEE ARIGKEVQAN EKRIRKELEK QDLLRRKREE  360
QMKKEMERQD RERRKEEQRL MREQQRKEER FQREEKREME RREKFLQKEL LRVERKKQKE  420
ELRKEREAAK QKVAMERAMA RRIAKESMEL IEDERLELMD LAASSKGLLS IASLDYDTLQ  480
NLESFRESLC EFPPKSVQLK KPFSIQPWNA SDDNVGNLLM AWRFCLNFAD ILGLWPFTLD  540
EFLQAFHDYD SRLLAEIHIA LLKLIIKDIE DVARTPSGGP GTNQYSAVNP EGGHPQIVEG  600
AYLWGFDIRN WQKHLTPLTW PEVLRQFALS AGFGPPLKKK RERACLNDSD ETKGCEDVVS  660
TLRSGSAAEK AVAIMQEKGF MSQRKSRHRL TPGTVKFAAY HVLALEGDKG LNVLDIAERI  720
QKSGLRDLST SKTPEASISV ALSRDPILFE RIAPSTYNVR LAFRKDPADA DAIISAAKEK  780
IQRYANGFLS GQNAEDEERD DDSEGEGDVA EGPEVDDLGT PYGANKNSEQ CSILDTCLVN  840
GKSKPSDEVA QQIGVDVAGI EGSNPSQECS EIDESKAGQP WVQGLTEGEY SDLCVEERLN  900
ALVALIGIAN EGNSIRVILE DRLDAANALK KQMWAEAQLD KRRLKEETIN KFTDSSFNAV  960
VEGSQSPLGF PNSKNQGTAP TTLVKDESAV VVDNVQNHFE SISAEKSSVA QETFMGELAI  1020
QPSGSTAERS RMQLKSFIGH KAEEMYVYRS LPLGQDRRRN RYWLFVASGS SEDPGSGRIF  1080
VEPPHGCWRL IDTEEAFDCL LASLDTRGVR ESHLHIMLQK IEGPFKERVR RSYDDIIVQH  1140
GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDSWETSS SFKIELGKNE EERRNAFKRY  1200
QSFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICRHCLDS YPSEEGNCPS CNKMSGKVDM  1260
NAEFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDRR  1320
RTWGMKLQNS LSPEDLLQIL TQLEGVIKRD YLSADYETAE ELMGLCALSI NAACESTFPG  1380
SVPQLPWIPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPVELS SPLIQNPSLG  1440
YACMKDLQKV EPEVDRDGPL REENWDYLSS MPSSSRSRQV VRGRGGGRPR GRLQKGSASK  1500
ISESGRAGVR PIETLTQVLI KQGETHGQRH VRGRRTVRKR RIEKKIVEEI QPDYLGDKGS  1560
RLTFVVPPRK HGREEFDMNV EGIEATNDDS NSMEAADSDD CAPENTYQFN RSDLMEMSDE  1620
DQDGFACDGN DDDNDDDDDD DDDDPDNDND DRYRSHGQNM ERYGNMVEDD SDRDGDVNED  1680
QESDSSESGD YSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781785.1	0.0	PREDICTED: uncharacterized protein LOC104230625 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1U7X5N1	0.0	A0A1U7X5N1_NICSY; uncharacterized protein LOC104230625 isoform X1
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator