PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009781411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 459aa MW: 51397 Da PI: 6.9836 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 121 | 166 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ XP_009781411.1 121 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 166 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 8.9e-18 | 173 | 216 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_009781411.1 173 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.413 | 116 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 120 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 121 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-28 | 121 | 214 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 122 | 174 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-12 | 124 | 165 | No hit | No description |
PROSITE profile | PS51294 | 27.288 | 168 | 222 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 172 | 220 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 173 | 215 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-11 | 175 | 215 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 175 | 221 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MSLSSSTSSS CSPMSSTSMG MFFADMNSLS ITPKNYSITS HDNESSKTRG SWDFQFLNKE 60 AFSQSLDEAE TSEENNETID LNASCFNEEK QITMHSSTIF NSSSNIGKEI TESGQSKLCA 120 RGHWRPAEDA KLKELVAIYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE 180 EERLMAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSSAHR RRKMGQFVYR 240 RTTLEEDSNS SLFVSSSKEV AEVAMKGETQ TPIISVGQNS ANPFGSLKIN NDGPNGWFVY 300 GPNGSPHWAA SVGEAIPSTK TNVPLLSSYS PFCAPFDTLP GQCGNEEMNI LNQQGRSWER 360 QREASNISHN IISHHHHSLT PSNSLMMMNS MQQSQYLQFP YSNFSNVTTA RAQTPSQVTV 420 KEDRRTSSNS SSDNNSQCDQ CETIAPPPPF IDFLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 121 | 221 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG983331 | 0.0 | HG983331.1 Nicotiana benthamiana mRNA for SANT/HTH Myb transcription factor (SANT/HTH Myb gene), clone 3890. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781411.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A1U7WVR6 | 0.0 | A0A1U7WVR6_NICSY; transcription factor MYB86-like | ||||
STRING | XP_009781411.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-76 | myb domain protein 105 |