PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781393.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 539aa    MW: 60050.5 Da    PI: 8.356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-1817981198
                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +s  l +p kf+++++g    s t  l  +sg+sW + l   +++++ ++ +GW +Fvk++ L++gD +vF++dg+  f   v +f+
  XP_009781393.1 17 IQSETLKIPSKFIKHMEGR--ASGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASFVKDHCLESGDALVFRYDGDLHF--AVLAFD 98
                    556789*******777777..4459***************..99999***************************997555..677666 PP
2B357.42.6e-18236330198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v
  XP_009781393.1 236 FMKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVHKCE--LRV 326
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_009781393.1 327 HVLR 330
                     8877 PP
3B348.61.4e-154315131297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  XP_009781393.1 431 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 513
                     5567899****99996..45889****************8888887789999*********************998..566688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-243102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-233101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-17798No hitNo description
PROSITE profilePS5086313.9727100IPR003340B3 DNA binding domain
SMARTSM010191.8E-129100IPR003340B3 DNA binding domain
PfamPF023622.2E-151698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-23228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24229331IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-20234330No hitNo description
PfamPF023625.3E-16236330IPR003340B3 DNA binding domain
SMARTSM010194.7E-16236332IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803236332IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-24415513IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-23415513IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-19418513No hitNo description
SMARTSM010192.7E-11420516IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717420516IPR003340B3 DNA binding domain
PfamPF023625.3E-13423513IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MWDAKRPHFL VGFNPSIQSE TLKIPSKFIK HMEGRASGTA FLVGPSGNSW PMDLIQQDDG  60
LFFHNGWASF VKDHCLESGD ALVFRYDGDL HFAVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLDCIVE GVPKKMRSTQ SPSECTAEDA VCSNGRSYAS SFLNEIENAG  180
NASNNTVTIA VPSQTEIVCS NPEVKTGNGT SEEPMWLSAQ EAEKVARSFT SSFPNFMKVM  240
KRFNVSGSYT LNIPYQFATE HLPKCKVKIL LHNLKGKTWT VNSIPTTRVQ TSHTFCGGWL  300
SFVRDNNIDL GDICIFELVH KCELRVHVLR VEKEGNDYSS KQVAKAKTYD KRGSAHGKEK  360
HGNMLKSHQL HLSKICSGDS VIRKPAQVKQ GSFTKSCMSM KSVPEEKLAA ESFISNFPHF  420
VRIMKKFNIS GSYTLKVPYQ FSMEHLPNCR TEIVLRNLKG ECWTVNSIPT MKVQTLHTFC  480
GGWSAFVRDN DIQMGDICIF ELVGKYEMRV HICAIGKKGL DYRNGITSNE SAILASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-137CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-137HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-137HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781392.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781393.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781394.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781395.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1U7X3F00.0A0A1U7X3F0_NICSY; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-22B3 family protein