PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 401aa    MW: 43138.3 Da    PI: 5.8313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-1757102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
   XP_009781248.1  57 KGPWSQEEDAVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 102
                      79******************************.***********985 PP

2Myb_DNA-binding57.62.9e-18109153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
   XP_009781248.1 109 RKPFTEEEDNIIISAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 153
                      789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.87952103IPR017930Myb domain
SuperFamilySSF466892.7E-3154150IPR009057Homeodomain-like
SMARTSM007174.1E-1556105IPR001005SANT/Myb domain
PfamPF002491.4E-1657102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2658110IPR009057Homeodomain-like
CDDcd001672.39E-1459101No hitNo description
PROSITE profilePS5129426.804104158IPR017930Myb domain
SMARTSM007171.0E-17108156IPR001005SANT/Myb domain
PfamPF002491.7E-16109153IPR001005SANT/Myb domain
CDDcd001678.60E-14111154No hitNo description
Gene3DG3DSA:1.10.10.609.8E-25111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEDEAEQSNF KLCDAAVNDG EPSAVAFKAL DDSDVTLPDG GGDGNGGGGG GGGGKVKGPW  60
SQEEDAVLSE LVSKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK PFTEEEDNII  120
ISAHAVHGNR WASIAKLLPG RTDNAIKNHW NSTLRRRFAG LRKVKPVHCE RLDNSSIDRV  180
KVSSEETKSF EDHDHSKAQE AGEVILMQCQ PSQFEDRSPT NEMSAAPEKI PHLVSGRCHS  240
TIMEKNPSVS RPIAKIGAFD VFNLSSAPFA SSRTVPMQGP LLQVSSPPFG ICKFLEGVSD  300
DPVIPLRCGH GCCSAPSMSF SGSSLLGPEF VEYEELPAVS SHELTAIATD LNNIAWIKSG  360
VENAGRLSGR TTSQRDYQGS STSTPMPMSN FTLPTEVESL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-43561576107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-40HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781248.10.0PREDICTED: transcription factor MYB122-like
RefseqXP_016478403.10.0PREDICTED: transcription factor MYB122-like
TrEMBLA0A1S4APJ40.0A0A1S4APJ4_TOBAC; transcription factor MYB122-like
TrEMBLA0A1U7WRN60.0A0A1U7WRN6_NICSY; transcription factor MYB122-like
STRINGXP_009781248.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-101myb domain protein 109