PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009781248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 43138.3 Da PI: 5.8313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + XP_009781248.1 57 KGPWSQEEDAVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 102 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 109 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ XP_009781248.1 109 RKPFTEEEDNIIISAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 153 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.879 | 52 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-31 | 54 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 56 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 58 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-14 | 59 | 101 | No hit | No description |
PROSITE profile | PS51294 | 26.804 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-17 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 109 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.60E-14 | 111 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 111 | 157 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MEDEAEQSNF KLCDAAVNDG EPSAVAFKAL DDSDVTLPDG GGDGNGGGGG GGGGKVKGPW 60 SQEEDAVLSE LVSKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK PFTEEEDNII 120 ISAHAVHGNR WASIAKLLPG RTDNAIKNHW NSTLRRRFAG LRKVKPVHCE RLDNSSIDRV 180 KVSSEETKSF EDHDHSKAQE AGEVILMQCQ PSQFEDRSPT NEMSAAPEKI PHLVSGRCHS 240 TIMEKNPSVS RPIAKIGAFD VFNLSSAPFA SSRTVPMQGP LLQVSSPPFG ICKFLEGVSD 300 DPVIPLRCGH GCCSAPSMSF SGSSLLGPEF VEYEELPAVS SHELTAIATD LNNIAWIKSG 360 VENAGRLSGR TTSQRDYQGS STSTPMPMSN FTLPTEVESL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-43 | 56 | 157 | 6 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 3e-40 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781248.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
Refseq | XP_016478403.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
TrEMBL | A0A1S4APJ4 | 0.0 | A0A1S4APJ4_TOBAC; transcription factor MYB122-like | ||||
TrEMBL | A0A1U7WRN6 | 0.0 | A0A1U7WRN6_NICSY; transcription factor MYB122-like | ||||
STRING | XP_009781248.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-101 | myb domain protein 109 |