PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009781057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 376aa MW: 42394.1 Da PI: 6.5171 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 178 | 227 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a++k++g XP_009781057.1 178 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 227 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-39 | 178 | 241 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-14 | 178 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 178 | 236 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.673 | 178 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-33 | 178 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 179 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.65E-16 | 186 | 237 | No hit | No description |
PRINTS | PR00367 | 6.3E-12 | 201 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MCIYKVANSR DKISNRRRHE DRDRDDNYNV LESMFSGNIN REQEMSVMVS ALKHVVAGED 60 RLNHQILTDE NGAAENNLGS GFSSVSWGVG EKRGREQRQS SQQFLHIGSS DMRSSGGEGT 120 SIRTITSSTP TTEATFIYTS TNDHQNSSSD QSNGDNNNNN NNNNNNNNNN NNSQSRRRYR 180 GVRQRPWGKW AAEIRDPYKA TRVWLGTFDT AEAAARAYDE AALKFRGSKA KLNFPENVKL 240 LPSPVLSDSP NTLYSVSSSP DPIVYTSLYR PNFIEYPLRD DKPIVHTSQY RSNFIERPQT 300 DEPILHTSHH QALNNSADLN DQTFTNDDEF HRLHLPYFPN MFLSPIQPQV HIQPNASQSE 360 LVTEALAPPS SSSAPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-23 | 177 | 238 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT990489 | 2e-51 | CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 2e-51 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 2e-51 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781057.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF036-like | ||||
TrEMBL | A0A1U7WM69 | 0.0 | A0A1U7WM69_NICSY; ethylene-responsive transcription factor ERF036-like | ||||
STRING | XP_009781057.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 4e-21 | ERF family protein |