PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009780873.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1019aa MW: 113151 Da PI: 7.6105

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009780873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.8	2.8e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R++ +k XP_009780873.1 66 KRPRDLLNPKAIKYMQSVFSIKDSINKKETREISALFGVTVTQVRDFFTAQRTRVRK 122 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.232	63	123	IPR001356	Homeobox domain
SMART	SM00389	0.0025	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-6	65	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-5	66	129	IPR009057	Homeodomain-like
CDD	cd00086	2.06E-4	66	122	No hit	No description
Gene3D	G3DSA:1.20.930.10	8.4E-4	225	315	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDSI NKKETREISA LFGVTVTQVR DFFTAQRTRV 120 RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD 180 VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMDWILEVQ NPSVLFWFLA KGGVMILATW 240 LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA 300 KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP 360 SEYSRKLDSS HPVKLLTASS DDSTKRLNKG ALASKTRERR KVQLMEQPSQ RTTGRSLAVG 420 RPATATQGRP LSADDIQKAK MRAQFMQSKY GKAKNDESSR VKAEAPNGVT TPQDDILQGD 480 PKLLGCPKDD EHEKLDSVAL KGFKQQESHR KLSFDVEEPP WKRCRRMQIP WCKPPEVKMS 540 DAWKVCDGGE SKEVDIQNNR IRRERETIYR TVQEIPLNPK EPWDREMDPD DTLTTEIPIE 600 QLPDAEGAET VVLRPEDEET EAASASTSNG IATTAEPDVE LLAVLLKNPE LVYALTSGQA 660 GNLSSEETVK LLDMIKANGM NSLSSVTDLG RTAEKKVEVS LPSPTPSSDP GTSGSMQGFA 720 KNPFSQRSLM AVPEANGATQ LAVLVRSQEK LQTSSSIYPQ STSSTMLAPQ QLPIAPQLAQ 780 QLSLLQAAAG SFGKDHRLSP LNPNLNQTVL ANPMHSQLSA SEPAVNRNNY SPFGLTEYNL 840 HSATASAATT RIQGQTSGNI RSSPMPIANV QERTISLHMP QMAVSHTPPR PQLQTQPRPG 900 YAPEHMWGTM SGSTLNRGYQ ENSIPNHYNT RLAGHGEPGL QQAAWRGNYV EEAGFESWSP 960 DNSPVRRQEQ LGRWNHSEPR MNMRENYRSD WSTLRNPSYY SGYHGPDDGG NRRWGDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QSVFSIKDSI NKKETREISA LFGVTVTQVR DFFTAQRTRV  120
RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD  180
VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMDWILEVQ NPSVLFWFLA KGGVMILATW  240
LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA  300
KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP  360
SEYSRKLDSS HPVKLLTASS DDSTKRLNKG ALASKTRERR KVQLMEQPSQ RTTGRSLAVG  420
RPATATQGRP LSADDIQKAK MRAQFMQSKY GKAKNDESSR VKAEAPNGVT TPQDDILQGD  480
PKLLGCPKDD EHEKLDSVAL KGFKQQESHR KLSFDVEEPP WKRCRRMQIP WCKPPEVKMS  540
DAWKVCDGGE SKEVDIQNNR IRRERETIYR TVQEIPLNPK EPWDREMDPD DTLTTEIPIE  600
QLPDAEGAET VVLRPEDEET EAASASTSNG IATTAEPDVE LLAVLLKNPE LVYALTSGQA  660
GNLSSEETVK LLDMIKANGM NSLSSVTDLG RTAEKKVEVS LPSPTPSSDP GTSGSMQGFA  720
KNPFSQRSLM AVPEANGATQ LAVLVRSQEK LQTSSSIYPQ STSSTMLAPQ QLPIAPQLAQ  780
QLSLLQAAAG SFGKDHRLSP LNPNLNQTVL ANPMHSQLSA SEPAVNRNNY SPFGLTEYNL  840
HSATASAATT RIQGQTSGNI RSSPMPIANV QERTISLHMP QMAVSHTPPR PQLQTQPRPG  900
YAPEHMWGTM SGSTLNRGYQ ENSIPNHYNT RLAGHGEPGL QQAAWRGNYV EEAGFESWSP  960
DNSPVRRQEQ LGRWNHSEPR MNMRENYRSD WSTLRNPSYY SGYHGPDDGG NRRWGDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780873.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-162	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1U7WQL2	0.0	A0A1U7WQL2_NICSY; homeobox protein LUMINIDEPENDENS
STRING	XP_009780873.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-164	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]